PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S04122.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | MYB | ||||||||
Protein Properties | Length: 210aa MW: 24142.3 Da PI: 7.5059 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.2 | 6.7e-17 | 12 | 59 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed+ll +++ +G g W+ ++++ g++R++k+c++rw++yl Jcr4S04122.10 12 KGAWTPAEDDLLRSCIQIHGEGKWHEVPSKAGLNRCRKSCRLRWLNYL 59 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 46.8 | 7e-15 | 65 | 110 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 r ++T +E +l ++++++lG++ W++Ia +++ gRt++++k++w++++ Jcr4S04122.10 65 REKFTSDEIDLMARLHNLLGNR-WSLIAGRLP-GRTENDVKNFWNTHM 110 789*******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.262 | 7 | 63 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-22 | 10 | 62 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-14 | 11 | 61 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.11E-27 | 11 | 106 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.0E-16 | 12 | 59 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.35E-10 | 14 | 59 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-22 | 63 | 114 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-12 | 64 | 112 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 15.232 | 64 | 114 | IPR017930 | Myb domain |
Pfam | PF00249 | 3.7E-13 | 65 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.43E-8 | 67 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MESPLTDGVV RKGAWTPAED DLLRSCIQIH GEGKWHEVPS KAGLNRCRKS CRLRWLNYLK 60 PDIKREKFTS DEIDLMARLH NLLGNRWSLI AGRLPGRTEN DVKNFWNTHM RKELKPSNPH 120 CEEDDEKGKT VKIIKPRPCK ISKDISLFTA TAKDKDHRQN DNGSDNNDYG KGESAPTFFE 180 GESTGKENEW WRIIFDGIEM DMGIMGFPDV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 5e-21 | 12 | 114 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 7e-21 | 12 | 114 | 27 | 128 | MYB TRANSFORMING PROTEIN |
1mse_C | 5e-21 | 12 | 114 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 5e-21 | 12 | 114 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM034695 | 1e-143 | KM034695.1 Jatropha curcas clone JcMYB075 MYB family protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012080503.1 | 1e-132 | transcription factor MYB90 isoform X2 | ||||
Swissprot | Q9FNV9 | 7e-52 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | A0A097HUP7 | 1e-131 | A0A097HUP7_JATCU; MYB family protein | ||||
STRING | XP_006482384.1 | 4e-61 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 3e-54 | myb domain protein 113 |
Publications ? help Back to Top | |||
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