PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S04040.10

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

bZIP

Protein Properties

Length: 361aa MW: 39620 Da PI: 7.1821

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S04040.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.2	9.7e-10	152	200	5	53
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l + Jcr4S04040.10 152 KRAKRILANRQSAARSKERKARYILELERKVQTLQTEATTLSAQLTLFQ 200 9****************************************99887655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.5E-16	148	212	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.542	150	213	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	6.6E-10	152	206	No hit	No description
Pfam	PF00170	1.8E-8	152	200	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.97E-10	152	203	No hit	No description
CDD	cd14703	5.86E-23	153	202	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MSMEIQDPHS KHNPNSNSNS NPNLNSDPNP QNALAPRIPL SNSHSSTSMF SGGSSACSLE 60 EIGSEDDLFS TYIDVDKLNG DGRNSTDQSN NNNNNNNNGE GNGDKGGAST STSRPKHRHS 120 NSVDGSVYGD VMEAKKAMPP DKLQELWSID PKRAKRILAN RQSAARSKER KARYILELER 180 KVQTLQTEAT TLSAQLTLFQ RDTTGLSTEN TELKLRLQAM EQQAQLRDAL NEALKKEVER 240 LKVATGEIMS PAESFNLGMH QMPYTPSNFF PHPQQPGPAG HPNMQLPPLA HSQPSMPSHP 300 LHQTNSHALS EMMQNDPLGR LQGLDISSKA PNITDIQSLG EGFSQKKGST QVLMQRVRVL 360 V

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MSMEIQDPHS KHNPNSNSNS NPNLNSDPNP QNALAPRIPL SNSHSSTSMF SGGSSACSLE  60
EIGSEDDLFS TYIDVDKLNG DGRNSTDQSN NNNNNNNNGE GNGDKGGAST STSRPKHRHS  120
NSVDGSVYGD VMEAKKAMPP DKLQELWSID PKRAKRILAN RQSAARSKER KARYILELER  180
KVQTLQTEAT TLSAQLTLFQ RDTTGLSTEN TELKLRLQAM EQQAQLRDAL NEALKKEVER  240
LKVATGEIMS PAESFNLGMH QMPYTPSNFF PHPQQPGPAG HPNMQLPPLA HSQPSMPSHP  300
LHQTNSHALS EMMQNDPLGR LQGLDISSKA PNITDIQSLG EGFSQKKGST QVLMQRVRVL  360
V

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012077996.1	0.0	transcription factor RF2b
Swissprot	Q6S4P4	6e-99	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	A0A067LMP3	0.0	A0A067LMP3_JATCU; Uncharacterized protein
STRING	XP_002518293.1	1e-157	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1548	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	2e-94	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]