PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S04022.30 | ||||||||
Common Name | JCGZ_03738, LOC105649248 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | MYB | ||||||||
Protein Properties | Length: 242aa MW: 27893.2 Da PI: 5.0505 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.3 | 8.7e-14 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ eEd++l ++ + G +W+ ++ g+ R++k+c++rw +yl Jcr4S04022.30 14 KGAWSREEDDKLRAYIMKRGHCNWRELPKFAGLSRCGKSCRLRWVNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 56.3 | 7.4e-18 | 68 | 110 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g++++eE+ l+++++++lG++ W++Ia +++ gRt++++k++w++ Jcr4S04022.30 68 GNFSEEEENLIIQLHQELGNK-WSRIAMKLP-GRTDNEIKNHWHT 110 89*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.915 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.05E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-10 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-12 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-21 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.40E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 27.359 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 7.8E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-16 | 68 | 110 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-25 | 69 | 114 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.21E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MVRTASVDKN GLKKGAWSRE EDDKLRAYIM KRGHCNWREL PKFAGLSRCG KSCRLRWVNY 60 LRPGVKHGNF SEEEENLIIQ LHQELGNKWS RIAMKLPGRT DNEIKNHWHT RLKKLLLEQT 120 QVATEQVKEQ SSEIPPSQNI EAESVDIAVT PSLPIILESS PLSNEISDYS SVQTSSNCVA 180 EDAHSFTSMM GIFEETGEDF WTAPFVEDHI YNQDFYASSY SLYYDDNMDF IHQVMQELPD 240 NN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-25 | 12 | 114 | 25 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds DNA to the AC cis-elements 5'-ACCTACC-3', 5'-ACCAACC-3' and 5'-ACCTAAC-3' of promoters and specifically activates lignin biosynthetic genes during secondary wall formation mediated by SND1. {ECO:0000269|PubMed:19122102}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by light (PubMed:9839469). Regulated by the SND1 close homologs NST1, NST2, VND6, and VND7 and their downstream targets MYB46 and MYB83 (PubMed:19122102, PubMed:22197883). {ECO:0000269|PubMed:19122102, ECO:0000269|PubMed:22197883, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM034706 | 0.0 | KM034706.1 Jatropha curcas clone JcMYB086 MYB family protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012091229.1 | 0.0 | transcription factor MYB114 | ||||
Swissprot | Q9SA47 | 4e-52 | MYB58_ARATH; Transcription factor MYB58 | ||||
TrEMBL | A0A067JNK2 | 0.0 | A0A067JNK2_JATCU; MYB family protein | ||||
STRING | cassava4.1_023393m | 1e-114 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16770.2 | 6e-55 | myb domain protein 9 |
Link Out ? help Back to Top | |
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Entrez Gene | 105649248 |
Publications ? help Back to Top | |||
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