PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S04016.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | LSD | ||||||||
Protein Properties | Length: 161aa MW: 17228.1 Da PI: 7.7051 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 42.1 | 1.5e-13 | 30 | 54 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP GA+sV+Ca+C++V Jcr4S04016.10 30 CSGCRNLLLYPVGATSVCCAVCNAV 54 ************************9 PP | |||||||
2 | zf-LSD1 | 46.3 | 6.9e-15 | 69 | 93 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+t+ Jcr4S04016.10 69 CGGCHTLLMYIRGATSVQCSCCHTI 93 ***********************97 PP | |||||||
3 | zf-LSD1 | 36.1 | 1.1e-11 | 107 | 130 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+Cr lL+Y +GA+sV+Ca+C++ Jcr4S04016.10 107 CGNCRMLLMYQYGARSVKCAVCNF 130 **********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.90.10.10 | 4.9E-4 | 19 | 133 | No hit | No description |
TIGRFAMs | TIGR01053 | 1.2E-12 | 27 | 57 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.7E-10 | 30 | 54 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.7E-14 | 66 | 95 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.1E-12 | 69 | 93 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 2.0E-10 | 104 | 129 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 4.5E-12 | 107 | 129 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009814 | Biological Process | defense response, incompatible interaction | ||||
GO:0034051 | Biological Process | negative regulation of plant-type hypersensitive response | ||||
GO:0034052 | Biological Process | positive regulation of plant-type hypersensitive response | ||||
GO:0045595 | Biological Process | regulation of cell differentiation | ||||
GO:2000121 | Biological Process | regulation of removal of superoxide radicals |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MPVPLAPYPT PPAATYTPAP ANGAQSQLVC SGCRNLLLYP VGATSVCCAV CNAVTAVPPP 60 GTEMAQLICG GCHTLLMYIR GATSVQCSCC HTINLALEAN QVAHVNCGNC RMLLMYQYGA 120 RSVKCAVCNF CHIHWGQLQF YHCTFMPQQA QLSRNSTAEV E |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Negative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}. | |||||
UniProt | Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012075917.1 | 4e-89 | protein LOL1 | ||||
Refseq | XP_012075918.1 | 4e-89 | protein LOL1 | ||||
Refseq | XP_012075919.1 | 4e-89 | protein LOL1 | ||||
Swissprot | Q0J7V9 | 3e-71 | LSD1_ORYSJ; Protein LSD1 | ||||
Swissprot | Q93ZB1 | 1e-71 | LOL1_ARATH; Protein LOL1 | ||||
TrEMBL | A0A067KEI2 | 9e-88 | A0A067KEI2_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_018557m | 8e-80 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8187 | 33 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 6e-58 | lsd one like 1 |
Publications ? help Back to Top | |||
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