PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S04016.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family LSD
Protein Properties Length: 161aa    MW: 17228.1 Da    PI: 7.7051
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S04016.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.11.5e-133054125
        zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                   C+gCr+lL YP GA+sV+Ca+C++V
  Jcr4S04016.10 30 CSGCRNLLLYPVGATSVCCAVCNAV 54
                   ************************9 PP

2zf-LSD146.36.9e-156993125
        zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                   CggC+tlL+Y rGA+sV+C++C+t+
  Jcr4S04016.10 69 CGGCHTLLMYIRGATSVQCSCCHTI 93
                   ***********************97 PP

3zf-LSD136.11.1e-11107130124
        zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdt 24 
                    Cg+Cr lL+Y +GA+sV+Ca+C++
  Jcr4S04016.10 107 CGNCRMLLMYQYGARSVKCAVCNF 130
                    **********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.10.104.9E-419133No hitNo description
TIGRFAMsTIGR010531.2E-122757IPR005735Zinc finger, LSD1-type
PfamPF069431.7E-103054IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.7E-146695IPR005735Zinc finger, LSD1-type
PfamPF069431.1E-126993IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.0E-10104129IPR005735Zinc finger, LSD1-type
PfamPF069434.5E-12107129IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MPVPLAPYPT PPAATYTPAP ANGAQSQLVC SGCRNLLLYP VGATSVCCAV CNAVTAVPPP  60
GTEMAQLICG GCHTLLMYIR GATSVQCSCC HTINLALEAN QVAHVNCGNC RMLLMYQYGA  120
RSVKCAVCNF CHIHWGQLQF YHCTFMPQQA QLSRNSTAEV E
Functional Description ? help Back to Top
Source Description
UniProtNegative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}.
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012075917.14e-89protein LOL1
RefseqXP_012075918.14e-89protein LOL1
RefseqXP_012075919.14e-89protein LOL1
SwissprotQ0J7V93e-71LSD1_ORYSJ; Protein LSD1
SwissprotQ93ZB11e-71LOL1_ARATH; Protein LOL1
TrEMBLA0A067KEI29e-88A0A067KEI2_JATCU; Uncharacterized protein
STRINGcassava4.1_018557m8e-80(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81873346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.36e-58lsd one like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]