PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S03995.30

Common Name

JCGZ_17992, LOC105644839, WRKY17

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

WRKY

Protein Properties

Length: 203aa MW: 22693.2 Da PI: 9.7301

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S03995.30	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.8	4.6e-33	124	182	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+ +v++tYeg H h+ Jcr4S03995.30 124 LDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTRDEGIVITTYEGMHSHP 182 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.7E-34	109	182	IPR003657	WRKY domain
SuperFamily	SSF118290	8.24E-30	116	183	IPR003657	WRKY domain
PROSITE profile	PS50811	30.228	119	184	IPR003657	WRKY domain
SMART	SM00774	5.1E-39	124	183	IPR003657	WRKY domain
Pfam	PF03106	9.0E-27	125	182	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000122	Biological Process	negative regulation of transcription from RNA polymerase II promoter
GO:0010055	Biological Process	atrichoblast differentiation
GO:0032107	Biological Process	regulation of response to nutrient levels
GO:0043620	Biological Process	regulation of DNA-templated transcription in response to stress
GO:0048527	Biological Process	lateral root development
GO:0005634	Cellular Component	nucleus
GO:0001046	Molecular Function	core promoter sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MENYTSFFQL SSSPPHAAAS SSSMSLNMGS SNNSSYGFTD YFQVNSKENG LLGLMQEVEA 60 VDRPLMLGGS GGGHGGGLNG NHSSISSEHE NNKSKRFGSG NSKGEKKIKK PRYAFQTRSQ 120 VDILDDGYRW RKYGQKAVKN NKFPRSYYRC THQGCNVKKQ VQRLTRDEGI VITTYEGMHS 180 HPIEKSTDNF EHILTQMQIY TNS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-27	115	183	8	76	Probable WRKY transcription factor 4
2lex_A	1e-27	115	183	8	76	Probable WRKY transcription factor 4
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00506	DAP	Transfer from AT5G13080	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC485269	1e-167	KC485269.1 Jatropha curcas WRKY transcription factor 17 (WRKY17) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012085719.1	1e-114	probable WRKY transcription factor 75
TrEMBL	S5CKE7	1e-112	S5CKE7_JATCU; WRKY transcription factor 17
STRING	cassava4.1_023502m	4e-81	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1156	34	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13080.1	2e-58	WRKY DNA-binding protein 75

Link Out ? help Back to Top
Entrez Gene	105644839

Publications ? help Back to Top
Xiong W, et al. Genome-wide analysis of the WRKY gene family in physic nut (Jatropha curcas L.). Gene, 2013. 524(2): p. 124-32 [PMID:23644253] Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]