PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S03882.50
Common NameLOC105646020
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB
Protein Properties Length: 265aa    MW: 30251.2 Da    PI: 9.6705
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S03882.50genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.22.5e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+ Ed ll+++++  G g+W++ +++ g+ R++k+c++rw +yl
    Jcr4S03882.50 14 RGAWTAREDRLLINYIQSNGEGRWRSLPQKAGLLRCGKSCRLRWMNYL 61
                     89******************************99************97 PP
2Myb_DNA-binding51.42.4e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T +Ed+l+++++ +lG++ W++Ia +++ gRt++++k++w+++l
    Jcr4S03882.50  67 RGNITSDEDDLIIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 112
                      7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.465961IPR017930Myb domain
SuperFamilySSF466892.73E-2811108IPR009057Homeodomain-like
SMARTSM007171.3E-111363IPR001005SANT/Myb domain
PfamPF002496.4E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-221568IPR009057Homeodomain-like
CDDcd001672.25E-91661No hitNo description
PROSITE profilePS5129425.98262116IPR017930Myb domain
SMARTSM007172.9E-1566114IPR001005SANT/Myb domain
PfamPF002491.5E-1467112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.7E-2669117IPR009057Homeodomain-like
CDDcd001676.86E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MGRAPCCSKL DLQRGAWTAR EDRLLINYIQ SNGEGRWRSL PQKAGLLRCG KSCRLRWMNY  60
LRPDIKRGNI TSDEDDLIIR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNS HLSKRIKHTS  120
TTKDKCLVSS SDQPTNKIKK GNNYQEPATP NGETNKKMNK IYIPKAVRVS SAVSFTRTKS  180
FNSNMGSGSS NHLPWSWSDL EGEALPSINN YYKDDYVYGC VSSSQTYMPM TNDDKMLDGI  240
FEEYERLLKK DNIAHLDSFI DSLLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26111164108B-MYB
1h8a_C3e-261111624128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0347020.0KM034702.1 Jatropha curcas clone JcMYB082 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012087180.10.0transcription factor MYB111
TrEMBLA0A097HUQ00.0A0A097HUQ0_JATCU; MYB family protein
STRINGXP_002518878.11e-105(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.13e-66myb domain protein 111