PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S03846.10
Common NameJCGZ_26709, LOC105646858
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C3H
Protein Properties Length: 232aa    MW: 24989.3 Da    PI: 8.4996
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S03846.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.99.8e-106388227
                   -S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                   kt+lC+ +     Ck+Gd+C+FaHg+
  Jcr4S03846.10 63 KTRLCNKYNTAEGCKFGDKCHFAHGE 88
                   8***********************96 PP
2zf-CCCH35.32e-11199224127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    +kt+lC +f + G C +GdrC+FaHg+
  Jcr4S03846.10 199 FKTKLCENFTK-GSCTFGDRCHFAHGE 224
                    69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501037.939122IPR000571Zinc finger, CCCH-type
PfamPF146081.8919No hitNo description
Gene3DG3DSA:4.10.1000.109.7E-155993IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-86092IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.5356189IPR000571Zinc finger, CCCH-type
SMARTSM003560.00136188IPR000571Zinc finger, CCCH-type
PfamPF006428.7E-76388IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.1370.102.1E-15103178IPR004088K Homology domain, type 1
SMARTSM003225.8E-11106176IPR004087K Homology domain
PROSITE profilePS5008413.271107171IPR004088K Homology domain, type 1
SuperFamilySSF547913.07E-14107179IPR004088K Homology domain, type 1
CDDcd001053.40E-13111171No hitNo description
PfamPF000134.5E-10111173IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.6E-16196230IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-9197228IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.009198225IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-8198224IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-9199224IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MVLRHTSGCP FGEGCHFLHY VPGGFKAVSQ MLNIGSNQAL PPANRNSGVP PSFPDGSSPP  60
AVKTRLCNKY NTAEGCKFGD KCHFAHGEWE LGKPTGPSYE DPRSMGPIPA KISIDASLAG  120
AIIGKNGVNS KQICRLTGAK LSIREHETDP NLRNIEFEGT FDQINQASSM VRELIGNVSQ  180
ASAPPMKNPA MHSSASQNFK TKLCENFTKG SCTFGDRCHF AHGENDLRKP GM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012088179.11e-164zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R04e-96C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A067JK641e-162A0A067JK64_JATCU; Uncharacterized protein
STRINGcassava4.1_012715m1e-143(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.15e-63C3H family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]