PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S03701.20
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB
Protein Properties Length: 469aa    MW: 51356.8 Da    PI: 7.127
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S03701.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.5e-175297147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd +l ++v ++G ++W++Iar +  gR++k+c++rw + 
    Jcr4S03701.20 52 KGPWSPEEDAILSRLVSKFGARNWSLIARGIS-GRSGKSCRLRWCNQ 97
                     79******************************.***********985 PP
2Myb_DNA-binding54.13.6e-17104148147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r+++T eEd +++ a++ +G++ W+ Iar ++ gRt++ +k++w++ 
    Jcr4S03701.20 104 RKPFTDEEDRIIAAAHAVHGNK-WAVIARLLP-GRTDNAIKNHWNST 148
                      789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.7554798IPR017930Myb domain
SuperFamilySSF466893.33E-3049145IPR009057Homeodomain-like
SMARTSM007176.2E-1551100IPR001005SANT/Myb domain
PfamPF002493.6E-165297IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-2653104IPR009057Homeodomain-like
CDDcd001676.53E-145496No hitNo description
PROSITE profilePS5129425.46599153IPR017930Myb domain
SMARTSM007173.7E-16103151IPR001005SANT/Myb domain
PfamPF002491.6E-14104148IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-23105152IPR009057Homeodomain-like
CDDcd001679.74E-12106149No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MEKEIKDKKA IEIDGVNSGD GGGEDGSGSG DDLLLAVGEG GGSGQTCKDR VKGPWSPEED  60
AILSRLVSKF GARNWSLIAR GISGRSGKSC RLRWCNQLDP AVKRKPFTDE EDRIIAAAHA  120
VHGNKWAVIA RLLPGRTDNA IKNHWNSTLR RRSTERERLR LASGNVDQDA NLDKTKASSE  180
ETLSCGDANS FKSLEGKDVS SLDNMEDQCE EKAPLEIPSN NEAKESSTLF RPMARVSAFN  240
VYHSVDGPEI ASPCSRPIPV QGPLVQASTP DDGIRKLLDG VCNEQLVPQR CGHGCCEAHN  300
GKILQKSLLG PEFVDFLEPP SFPSFELAAI ATDISNLAWI KSGLENNTVR VMGNTAGRIT  360
SHGSQMQVGH LEESRVTNMR PLDQGEQLHL HDGNNMEHDL AQGYEFNQPL AKAGGRLHTS  420
TLFRARKNGI HCALDPFLYL FSLKFNKTQG QLLNPLKSFV KSILRWLCK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-40491524107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00337DAPTransfer from AT3G09230Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346270.0KM034627.1 Jatropha curcas clone JcMYB006 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012087961.10.0transcription factor MYB1
SwissprotQ425751e-107MYB1_ARATH; Transcription factor MYB1
TrEMBLA0A067JNW70.0A0A067JNW7_JATCU; MYB family protein
STRINGXP_002527890.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39863362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.11e-104myb domain protein 1
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  4. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]