PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S03657.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family FAR1
Protein Properties Length: 813aa    MW: 92878.9 Da    PI: 6.7138
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S03657.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1903.2e-2879166191
           FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                    +fY+eYAk++GF++++++s++sk+++e+++++f Cs++g + e++ +   ++r++++++t+Cka+++vk++ dgkw ++++++eHnHel p
  Jcr4S03657.10  79 SFYQEYAKSMGFTTSIKNSRRSKKSKEFIDAKFACSRYGVTPETDGS---NSRRSSVKKTDCKASMHVKRRPDGKWIIHEFVKEHNHELLP 166
                    5****************************************999877...889999********************************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.2E-2679166IPR004330FAR1 DNA binding domain
PfamPF105513.6E-25286379IPR018289MULE transposase domain
PROSITE profilePS509669.334495531IPR007527Zinc finger, SWIM-type
PfamPF044341.2E-4505529IPR007527Zinc finger, SWIM-type
SMARTSM005759.5E-8506533IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 813 aa     Download sequence    Send to blast
MIIMAGRNQH VAHDMVNLQD NVPFGDALGE NMVDVMDEAQ NGDGGVANYP KTAVAMFEES  60
TDFEPGNGIE FESHEAAYSF YQEYAKSMGF TTSIKNSRRS KKSKEFIDAK FACSRYGVTP  120
ETDGSNSRRS SVKKTDCKAS MHVKRRPDGK WIIHEFVKEH NHELLPALAY HFRIHRNVKL  180
AEKNNIDILH AVSERTRKMY VEMLRQSGGC QNFAFVQSDI NSQFEKGRHL ALDDGDAQAL  240
LEYFKRIKKE NPNFFYAIDL NEEQRLRNLF WVDAKSRNDY ISFSDVVSFD TYYVKYHEKL  300
PFAPFVGVNH HCQPILLGCA FVADESKLTF VWLLKTWLRA LGGQAPKVII TDMDKTLKAA  360
IEEVFPNTRH CFSLWHILEK MSETLSHVIK RHDDFLPEFH KCIFKSWTDE EFDMRWWTMV  420
TQFELHDDEW IQSLYDDRKK WVPTYMGDTF LAGISATQRS EIEVLGVVGC HPKKENEDGT  480
NVTFRVQDCE KNEYFLVTWD QTKSAVSCLC RLFEYKGFLC RHALIVLQIC GLSSIPTQYI  540
LKRWTKDARC RQPLTEGTRV ETRVQRYNTL CKLAIEMSEE GSLGEESYNI AFRTLVEALK  600
NCVNVNNRNN SVVESGSQSL AHHVEEENQG NLATKSSKKK NPVRKRKVQS DTDVMLVEAQ  660
DSMHQMVCPV FSALMDDVSC LTVTRGAQLH PERCLGSSSA LRLSAPCTFN ENLGTEGMTL  720
NGYYGTQQNV QGLVQLNLME PPHDGYYVNQ QSMQGLGQLN SIAQGHDGFF GTQQSMNGMG  780
QFDFRPPTSF SYSLQDDSHL RSSHLHGNAP RHA
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269|PubMed:18033885}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027363279.10.0protein FAR-RED IMPAIRED RESPONSE 1 isoform X8
SwissprotQ9SWG30.0FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBLA0A067KDU20.0A0A067KDU2_JATCU; Uncharacterized protein
STRINGPOPTR_0006s02140.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.10.0FAR1 family protein
Publications ? help Back to Top
  1. Domergue F, et al.
    Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition.
    Plant Physiol., 2010. 153(4): p. 1539-54
    [PMID:20571114]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Wang C, et al.
    SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes.
    J Genet Genomics, 2015. 42(4): p. 161-8
    [PMID:25953354]
  4. Wang W, et al.
    A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis.
    J Integr Plant Biol, 2016. 58(1): p. 91-103
    [PMID:25989254]
  5. Ma L, et al.
    Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1.
    Mol Plant, 2016. 9(4): p. 541-57
    [PMID:26714049]
  6. Siddiqui H,Khan S,Rhodes BM,Devlin PF
    FHY3 and FAR1 Act Downstream of Light Stable Phytochromes.
    Front Plant Sci, 2016. 7: p. 175
    [PMID:26941752]
  7. Liu L,Li B,Liu X
    FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis.
    Plant Signal Behav, 2016. 11(10): p. e1238545
    [PMID:27660915]
  8. Ma L,Xue N,Fu X,Zhang H,Li G
    Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar.
    New Phytol., 2017. 213(4): p. 1682-1696
    [PMID:27859295]
  9. Liu Y, et al.
    Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1.
    Plant Cell, 2017. 29(9): p. 2269-2284
    [PMID:28842534]
  10. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]