PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S03657.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | FAR1 | ||||||||
Protein Properties | Length: 813aa MW: 92878.9 Da PI: 6.7138 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 90 | 3.2e-28 | 79 | 166 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+eYAk++GF++++++s++sk+++e+++++f Cs++g + e++ + ++r++++++t+Cka+++vk++ dgkw ++++++eHnHel p Jcr4S03657.10 79 SFYQEYAKSMGFTTSIKNSRRSKKSKEFIDAKFACSRYGVTPETDGS---NSRRSSVKKTDCKASMHVKRRPDGKWIIHEFVKEHNHELLP 166 5****************************************999877...889999********************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.2E-26 | 79 | 166 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 3.6E-25 | 286 | 379 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.334 | 495 | 531 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.2E-4 | 505 | 529 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 9.5E-8 | 506 | 533 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 813 aa Download sequence Send to blast |
MIIMAGRNQH VAHDMVNLQD NVPFGDALGE NMVDVMDEAQ NGDGGVANYP KTAVAMFEES 60 TDFEPGNGIE FESHEAAYSF YQEYAKSMGF TTSIKNSRRS KKSKEFIDAK FACSRYGVTP 120 ETDGSNSRRS SVKKTDCKAS MHVKRRPDGK WIIHEFVKEH NHELLPALAY HFRIHRNVKL 180 AEKNNIDILH AVSERTRKMY VEMLRQSGGC QNFAFVQSDI NSQFEKGRHL ALDDGDAQAL 240 LEYFKRIKKE NPNFFYAIDL NEEQRLRNLF WVDAKSRNDY ISFSDVVSFD TYYVKYHEKL 300 PFAPFVGVNH HCQPILLGCA FVADESKLTF VWLLKTWLRA LGGQAPKVII TDMDKTLKAA 360 IEEVFPNTRH CFSLWHILEK MSETLSHVIK RHDDFLPEFH KCIFKSWTDE EFDMRWWTMV 420 TQFELHDDEW IQSLYDDRKK WVPTYMGDTF LAGISATQRS EIEVLGVVGC HPKKENEDGT 480 NVTFRVQDCE KNEYFLVTWD QTKSAVSCLC RLFEYKGFLC RHALIVLQIC GLSSIPTQYI 540 LKRWTKDARC RQPLTEGTRV ETRVQRYNTL CKLAIEMSEE GSLGEESYNI AFRTLVEALK 600 NCVNVNNRNN SVVESGSQSL AHHVEEENQG NLATKSSKKK NPVRKRKVQS DTDVMLVEAQ 660 DSMHQMVCPV FSALMDDVSC LTVTRGAQLH PERCLGSSSA LRLSAPCTFN ENLGTEGMTL 720 NGYYGTQQNV QGLVQLNLME PPHDGYYVNQ QSMQGLGQLN SIAQGHDGFF GTQQSMNGMG 780 QFDFRPPTSF SYSLQDDSHL RSSHLHGNAP RHA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269|PubMed:18033885}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027363279.1 | 0.0 | protein FAR-RED IMPAIRED RESPONSE 1 isoform X8 | ||||
Swissprot | Q9SWG3 | 0.0 | FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1 | ||||
TrEMBL | A0A067KDU2 | 0.0 | A0A067KDU2_JATCU; Uncharacterized protein | ||||
STRING | POPTR_0006s02140.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G15090.1 | 0.0 | FAR1 family protein |