PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S03648.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family M-type_MADS
Protein Properties Length: 362aa    MW: 40391.7 Da    PI: 8.1235
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S03648.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.91.7e-201053245
                   ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
         SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                   + en+  rq t+ kR++gi+KKA+ELS+LCd+++ +++fs+tgk
  Jcr4S03648.10 10 KLENTNGRQATYGKRKHGIMKKAKELSILCDIDIILLMFSPTGK 53
                   6799**************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.422153IPR002100Transcription factor, MADS-box
SMARTSM004325.8E-27160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-24295IPR002100Transcription factor, MADS-box
CDDcd002663.17E-23282No hitNo description
PRINTSPR004048.4E-16323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-171154IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-162338IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-163859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MGRVKLKIKK LENTNGRQAT YGKRKHGIMK KAKELSILCD IDIILLMFSP TGKPSICKGK  60
KSSIEEVIAK FAHLTPQERA KRKLESLEAL KKTFKKLDHD VNIPEFLGTS SQTTEDLSNQ  120
SRLLQNQLSE AHKRLSYWSN PDKINSIEHL GDQGSCANNL TSFQEYLGKQ QFMSLECNSQ  180
FQNGMQLPFR MGAEQQLPPM PWIPNNDNQQ IVLPDDPNLL PHRVTVEEKI KREIEMVEVA  240
GDKSEGKAKP VPTSLGLRIT SLEYKKWDVE CSASSSFGSY SGYFGTGKSS ELSNSSQENA  300
EMNLQESPVD FHVNGSYEAP KPGYDTTPGS WASSSGPCAV TMFDEHLYSR VSSNLSFSGS  360
IK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-12196194MEF2C
5f28_B7e-12196194MEF2C
5f28_C7e-12196194MEF2C
5f28_D7e-12196194MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020533759.10.0agamous-like MADS-box protein AGL30 isoform X1
RefseqXP_020533760.10.0agamous-like MADS-box protein AGL30 isoform X2
RefseqXP_020533761.10.0agamous-like MADS-box protein AGL30 isoform X2
SwissprotQ1PFA44e-94AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLA0A067KYG70.0A0A067KYG7_JATCU; Uncharacterized protein
STRINGcassava4.1_025309m1e-172(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27503370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.13e-70AGAMOUS-like 65
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]