PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S03573.40

Common Name

GRAS19, JCGZ_00996, LOC105633059

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

GRAS

Protein Properties

Length: 490aa MW: 54435.9 Da PI: 5.4493

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S03573.40	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	464.4	6.4e-142	120	490	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 l+e+L +cA+av+++d+ +++l+a+l++++s +g+p+qRl ay++e+L arl++s+s++ykal+++e + s+e l+++++++ev+P++kf+++ Jcr4S03573.40 120 LKETLCACAQAVANNDMLTVEWLMAELRQMVSVSGEPIQRLGAYMLEGLVARLSSSGSSIYKALRCKEPT---SAELLSYMHILYEVCPYFKFGYM 212 5789***************************************************************9...9****************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190 aN aI ea+++e+rvHiiDf+isqG QW++L+qaLa+Rp+gpp++R+Tg++++++ + l +g+rL+++Ae+++vpfef++ +a + ++++ Jcr4S03573.40 213 SANGAIAEAMKTESRVHIIDFQISQGSQWVTLIQALAARPGGPPHIRLTGIDDSSAAyaRGGGLDIVGQRLSRLAESCKVPFEFHA-AAVSASEIQ 307 *************************************************888899999********************.899** PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286 le+Lr++p+Ea+aVn++l+lh+++desv ++++rd++L+lvkslsPkvv++veqe+++n+++F rf e l+yy a+f+s++++lpre++eri+vE Jcr4S03573.40 308 LENLRIQPDEAIAVNFALMLHHMPDESVGTQNHRDRLLRLVKSLSPKVVTLVEQESNTNTAPFIPRFNEVLNYYLAVFESIDVTLPREHKERINVE 403 ******************************************************************************************** PP GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +++l+reivn+vacegaer+erhe l+kW++r+ +aGF+p pls+++++++k+ll+ ++++ y++ee++gsl+lgW++rpL++ +aWr Jcr4S03573.40 404 QHCLAREIVNIVACEGAERVERHELLGKWKSRFAMAGFTPCPLSSYVNATIKALLESYSKN-YTLEERDGSLYLGWMNRPLIASCAWR 490 *******************************************************66.***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	69.983	94	471	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.2E-139	120	490	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005829	Cellular Component	cytosol

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence Send to blast
MHLSSEIFEQ HCTLESSSGS GVYPVHSSPS TASFSPNESA ISQLNSQSYL LDLHESSENT 60 SGSPDRSYVT HKLRELETAM MGPIDDLDTY NIMTPTGSNQ ITSEADMFKF LVEMMARGDL 120 KETLCACAQA VANNDMLTVE WLMAELRQMV SVSGEPIQRL GAYMLEGLVA RLSSSGSSIY 180 KALRCKEPTS AELLSYMHIL YEVCPYFKFG YMSANGAIAE AMKTESRVHI IDFQISQGSQ 240 WVTLIQALAA RPGGPPHIRL TGIDDSSAAY ARGGGLDIVG QRLSRLAESC KVPFEFHAAA 300 VSASEIQLEN LRIQPDEAIA VNFALMLHHM PDESVGTQNH RDRLLRLVKS LSPKVVTLVE 360 QESNTNTAPF IPRFNEVLNY YLAVFESIDV TLPREHKERI NVEQHCLARE IVNIVACEGA 420 ERVERHELLG KWKSRFAMAG FTPCPLSSYV NATIKALLES YSKNYTLEER DGSLYLGWMN 480 RPLIASCAWR

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence Send to blast

MHLSSEIFEQ HCTLESSSGS GVYPVHSSPS TASFSPNESA ISQLNSQSYL LDLHESSENT  60
SGSPDRSYVT HKLRELETAM MGPIDDLDTY NIMTPTGSNQ ITSEADMFKF LVEMMARGDL  120
KETLCACAQA VANNDMLTVE WLMAELRQMV SVSGEPIQRL GAYMLEGLVA RLSSSGSSIY  180
KALRCKEPTS AELLSYMHIL YEVCPYFKFG YMSANGAIAE AMKTESRVHI IDFQISQGSQ  240
WVTLIQALAA RPGGPPHIRL TGIDDSSAAY ARGGGLDIVG QRLSRLAESC KVPFEFHAAA  300
VSASEIQLEN LRIQPDEAIA VNFALMLHHM PDESVGTQNH RDRLLRLVKS LSPKVVTLVE  360
QESNTNTAPF IPRFNEVLNY YLAVFESIDV TLPREHKERI NVEQHCLARE IVNIVACEGA  420
ERVERHELLG KWKSRFAMAG FTPCPLSSYV NATIKALLES YSKNYTLEER DGSLYLGWMN  480
RPLIASCAWR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	8e-68	122	490	6	375	GRAS family transcription factor containing protein, expressed
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM405277	0.0	KM405277.1 Jatropha curcas GRAS19 protein (GRAS19) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012070969.1	0.0	scarecrow-like protein 21
Swissprot	Q8H125	0.0	SCL5_ARATH; Scarecrow-like protein 5
TrEMBL	A0A067L5A1	0.0	A0A067L5A1_JATCU; GRAS19 protein
STRING	cassava4.1_034216m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1653	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50600.1	0.0	scarecrow-like 5

Link Out ? help Back to Top
Entrez Gene	105633059

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]