PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Jcr4S03477.30 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
|
||||||||
Family | VOZ | ||||||||
Protein Properties | Length: 502aa MW: 55875.6 Da PI: 6.509 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 171.9 | 3.1e-53 | 213 | 308 | 1 | 96 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaaelf 96 p+psaf+gpkcalwdc+rpaqg ew++dycssfha+lalneg+pg++pvlrp+gi+lkd+llf+als+k+qgk+vgip+cegaa++k+pwnaa + Jcr4S03477.30 213 PSPSAFMGPKCALWDCSRPAQGYEWFKDYCSSFHANLALNEGPPGMSPVLRPRGIGLKDNLLFDALSTKAQGKNVGIPQCEGAASTKCPWNAAACL 308 89******************************************************************************************9765 PP | |||||||
2 | VOZ | 246.6 | 4.4e-76 | 325 | 449 | 93 | 217 |
VOZ 93 aelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelk 188 ++lfdlsll+getirewlffdkprrafesg+rkqrslpdysgrgwhesrkqvmkefgg+krsyymdpqp++++ewhl+eye+n++da+aly+lelk Jcr4S03477.30 325 NKLFDLSLLDGETIREWLFFDKPRRAFESGSRKQRSLPDYSGRGWHESRKQVMKEFGGHKRSYYMDPQPPGCYEWHLFEYEMNNYDACALYKLELK 420 579********************************************************************************************* PP VOZ 189 lvdekksakgkvskdsladlqkklgrlta 217 lv+ekk++kgkv+kdsladlqkk+grlta Jcr4S03477.30 421 LVNEKKTPKGKVTKDSLADLQKKMGRLTA 449 ***************************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 502 aa Download sequence Send to blast |
MQKGTKSKCS SASHHLMVDN AKNRLNVLQE RFFNLQAARK EGRIGDISIL EEQVYQSLRE 60 WKAELDAPSP ASSLHVRISK NLNGGSVGNF SDDIGRLLQL YEEQDDATSA LAEQPILEHE 120 PNVQSLNIGN FTAFEDGCLH NSEAQIHFQG FDQSNNSTIA LQNVVVSTSD MNTFLDCHQF 180 TLDEGFNHGL SFGANDNKEF GKSAEINNLP FCPSPSAFMG PKCALWDCSR PAQGYEWFKD 240 YCSSFHANLA LNEGPPGMSP VLRPRGIGLK DNLLFDALST KAQGKNVGIP QCEGAASTKC 300 PWNAAACLPL SSNAILKFSF AEQLNKLFDL SLLDGETIRE WLFFDKPRRA FESGSRKQRS 360 LPDYSGRGWH ESRKQVMKEF GGHKRSYYMD PQPPGCYEWH LFEYEMNNYD ACALYKLELK 420 LVNEKKTPKG KVTKDSLADL QKKMGRLTAD TTQENSPSTK GRIEADKTAH TEDVEFAPDL 480 KTSKAGSGGH DYAKNPLPSK FG |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012079019.1 | 0.0 | transcription factor VOZ1 isoform X1 | ||||
Swissprot | Q9SGQ0 | 1e-164 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | A0A067KIX4 | 0.0 | A0A067KIX4_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_030824m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1498 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G28520.2 | 1e-166 | vascular plant one zinc finger protein |
Publications ? help Back to Top | |||
---|---|---|---|
|