PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S03476.10
Common NameJCGZ_05885, LOC105650674
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family CO-like
Protein Properties Length: 431aa    MW: 49072.1 Da    PI: 4.993
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S03476.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box30.66.7e-101659340
       zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                   +r C+ +++k++++fC  ++ +lC++C ++ H+       H++v
  Jcr4S03476.10 16 ARACEGCSRKRARWFCAADDAFLCQSCDESVHSAnqlarrHERV 59
                   578*****************************657788888876 PP
2CCT66.57.3e-23380423144
            CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                    Rea++lRYkeKr+tR+F+KkirYe+RK +Ae+RpR+ GrFvk++
  Jcr4S03476.10 380 REARVLRYKEKRRTRLFSKKIRYEVRKLNAEKRPRLQGRFVKRT 423
                    9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003367.4E-121461IPR000315B-box-type zinc finger
PROSITE profilePS5011911.5621461IPR000315B-box-type zinc finger
PfamPF006434.6E-81659IPR000315B-box-type zinc finger
CDDcd000212.05E-101761No hitNo description
PfamPF062032.6E-17380422IPR010402CCT domain
PROSITE profilePS5101715.676380422IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MINERKAANA LSGKTARACE GCSRKRARWF CAADDAFLCQ SCDESVHSAN QLARRHERVR  60
LESSSFKPTV SNEYIPAWHQ GFTRKARTPR HNNNSNKKIF NNNSNLPLVP EIGNEEEGNG  120
IAADEDEDQF LYRVPVFDPF EAELCADDLY NEEEGNEIAI GNDQERINMG TDDNLDNYYL  180
PSDMDLAEFA ADVENLLGAG LDDNSPDRNN DLGFLEYCNK KQEQEESDYY SNNKFYFDEE  240
KVVKVKNEQQ MEEIVAGGCN LGQAFDQMGK EDWSFSYDQS SLVTGDEEEE EKVALPAVTN  300
TTVKVVSSDQ HKKEMKRDVS LRLNYEAVIT AWASHGSPWT TGTRPELNPD DCWPDCLGTC  360
PKDGHHHPYR GHNGGGNGGR EARVLRYKEK RRTRLFSKKI RYEVRKLNAE KRPRLQGRFV  420
KRTSFMGATF P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1390406RRTRLFSKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012093002.10.0zinc finger protein CONSTANS-LIKE 6
TrEMBLA0A067J8L90.0A0A067J8L9_JATCU; Uncharacterized protein
STRINGcassava4.1_007940m1e-177(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.16e-70B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]