PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S03391.50
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ARR-B
Protein Properties Length: 777aa    MW: 84399.8 Da    PI: 6.6278
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S03391.50genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like79.15.4e-25247296151
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                    kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQ
  Jcr4S03391.50 247 KPRVVWSVELHQQFVSAVNQL-GIDKAVPKRILELMNVPGLTRENVASHLQ 296
                    79*******************.***************************** PP
2Response_reg80.36.6e-27631711109
                    EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS
   Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGa 94 
                    vl+vdD+ + +++++q+l++  y +v+++++++ al+ll+e++  +D++l D+ mp+mdG++ll++   e  +lp+i+++a g  + + + ++ Ga
  Jcr4S03391.50  63 VLVVDDDTTCLKIVEQMLRRCLY-NVTTCSQAKVALNLLRERKgcYDVVLSDVHMPDMDGYKLLEQVGLEM-DLPVIMMSADGRTSAVMRGIRHGA 156
                    89*********************.*******************************************6644.8*********************** PP

                    SEEEESS--HHHHHH CS
   Response_reg  95 kdflsKpfdpeelvk 109
                     d+l Kp+ +eel +
  Jcr4S03391.50 157 CDYLIKPIREEELKN 171
                    ************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.6E-4360197No hitNo description
SuperFamilySSF521729.96E-3660189IPR011006CheY-like superfamily
SMARTSM004485.5E-3161173IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.0962177IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.0E-2363171IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.11E-2864176No hitNo description
Gene3DG3DSA:1.10.10.603.5E-25244296IPR009057Homeodomain-like
PROSITE profilePS5129411.858244303IPR017930Myb domain
SuperFamilySSF466891.08E-15244297IPR009057Homeodomain-like
TIGRFAMsTIGR015575.3E-22247297IPR006447Myb domain, plants
PfamPF002495.7E-6249296IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 777 aa     Download sequence    Send to blast
MCLSTQNALF ELFIAENLLL DSVIRRVASS VSATASSYGS CKGAATAAAD VVASDQFPAG  60
LRVLVVDDDT TCLKIVEQML RRCLYNVTTC SQAKVALNLL RERKGCYDVV LSDVHMPDMD  120
GYKLLEQVGL EMDLPVIMMS ADGRTSAVMR GIRHGACDYL IKPIREEELK NIWQHVVRKK  180
WHENKEHEHS GSLEDNDRHK RGNDDADHAS SVNEGTEGFL KCQKKRSSPK DEDDAEQEND  240
DPSTSKKPRV VWSVELHQQF VSAVNQLGID KAVPKRILEL MNVPGLTREN VASHLQVEQE  300
KQLVPLMRSS LPSDTLILLG KDFDSGSSRP LLVLLFLCDF CLQYFAAIAG GGCITEVLTL  360
LMIVDPASKK NCSFVASLSF HRLSFGIPVL YPKKFRLYLK RLSGVAQQGG ISNTFCGPLD  420
SNGKLNSLGR FDIQALAASG QIPPQTLAAL HAELFGRPTS SLVTTMDQPA LLQASIQGPK  480
CIPVEHGVAF GQPLVKCQPS ISKHFPKNIV SVEDVASGFG AWPSNNLGTV GPNTNLGCIT  540
TQNGNMLMDI LHQQQQPQQQ SIPETGRSIN VQPSCLVVPS QSSASFQAGN CPASINQNCN  600
FNRGAVIDYS LLSSQSNNTN IGHIRDGDLK NTGVVSGYSA PGSISPTSSC SVNADSGITR  660
QVQNSTTTFG ASRHMPGLAP NICDFQGSYG TKLGEVLDQG PLRNLGFVGK GTSIPTRFAV  720
DEFEVPINNL SHGKVYLENN GNKVKQEPNL DFTDNARIGM PVLQQFHPND LMSVFTE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-18243296154ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012072314.10.0two-component response regulator ORR21 isoform X1
SwissprotA2XE311e-109ORR21_ORYSI; Two-component response regulator ORR21
SwissprotQ8H7S71e-109ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLA0A067KT220.0A0A067KT22_JATCU; Two-component response regulator
STRINGXP_002533196.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118082433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-100response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]