PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S03358.30

Common Name

JCGZ_15098, LOC105644104

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

FAR1

Protein Properties

Length: 255aa MW: 29944.7 Da PI: 6.114

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S03358.30	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.1	2.2e-26	75	165	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +Y++++GF+vr++++++s+ n+ ++ ++fvCskeg+re++ ++++ + + tr gC+a+l++ +++ +kw+vtk+++eHnH+l+ Jcr4S03358.30 75 EFYIAYGRRTGFTVRIHHNRRSRVNNMVIGQDFVCSKEGFREKKYMYRKDR-VlpPPPITREGCHAMLRLALRDGDKWVVTKFVKEHNHTLM 165 6****************************************99983333.244899******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-23	75	165	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MESSTNQTFD SDDSERCFQD YDGPEFADDL SKNIDLCFGE VDKIIEQSNE NLLSMSDVVE 60 PYIGMEFKSR DDAREFYIAY GRRTGFTVRI HHNRRSRVNN MVIGQDFVCS KEGFREKKYM 120 YRKDRVLPPP PITREGCHAM LRLALRDGDK WVVTKFVKEH NHTLMSPSKV PWRGSAKNLV 180 SEYEKDRRIR ELTIELNSEK QRCKRQCAAY QEQLHMVLAF IEEHTNHLSS KVQDIVNNVK 240 ELENELLEDS DCKYV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012084757.1	0.0	protein FAR1-RELATED SEQUENCE 2
Refseq	XP_012084765.1	0.0	protein FAR1-RELATED SEQUENCE 2
TrEMBL	A0A067LDF8	0.0	A0A067LDF8_JATCU; Uncharacterized protein
STRING	XP_002527269.1	1e-162	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8861	30	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	6e-38	FAR1 family protein

Link Out ? help Back to Top
Entrez Gene	105644104

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]