PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S03325.60
Common NameJCGZ_21333, LOC105650129
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB
Protein Properties Length: 271aa    MW: 31744.7 Da    PI: 6.8714
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S03325.60genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.21.9e-131663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W+ eEde+lv ++k++G  +W+  ++  g+ R++k+c++rw +yl
    Jcr4S03325.60 16 KGIWSIEEDEKLVAYIKRFGIWNWNEMPKAAGLARSGKSCRLRWMNYL 63
                     678*****************99************************97 PP
2Myb_DNA-binding50.35.6e-1670114248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      g++++eE++ + +++k lG++ W++Ia++++ gRt++ +k++w++yl
    Jcr4S03325.60  70 GNFSKEEEDTIFKLHKTLGNR-WSAIAAELP-GRTDNGIKNYWNSYL 114
                      89*******************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.1131163IPR017930Myb domain
SuperFamilySSF466891.1E-2813110IPR009057Homeodomain-like
SMARTSM007176.3E-81565IPR001005SANT/Myb domain
PfamPF002496.2E-111663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-211870IPR009057Homeodomain-like
CDDcd001673.55E-71963No hitNo description
PROSITE profilePS5129424.29264118IPR017930Myb domain
SMARTSM007176.8E-1568116IPR001005SANT/Myb domain
PfamPF002496.1E-1570114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-2571119IPR009057Homeodomain-like
CDDcd001671.35E-971114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MRKMSAVFYD KRPLRKGIWS IEEDEKLVAY IKRFGIWNWN EMPKAAGLAR SGKSCRLRWM  60
NYLRPNIKHG NFSKEEEDTI FKLHKTLGNR WSAIAAELPG RTDNGIKNYW NSYLRKRLIN  120
NTATDQFQTH GPKPKKRIKY FSDHNYSSAA CTINRKPLVA DLESSNKENT NSSSSSIQLV  180
SEVDTTKALV SDNDYSLPAT EENRIELCGE LQTLCTEEGY QIWHEEATYN YHLNDLLENP  240
HFWFEDFQIS EEIQYLLDQP YCSMEGFGVW W
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-28141185108B-MYB
1h8a_C7e-281411825128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0347090.0KM034709.1 Jatropha curcas clone JcMYB089 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012092399.10.0myb-related protein Myb4
TrEMBLA0A067JAR80.0A0A067JAR8_JATCU; MYB family protein
STRINGcassava4.1_030905m1e-66(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28110.14e-48myb domain protein 41
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]