PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S03316.10
Common NameJCGZ_18633, LOC105641726
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family M-type_MADS
Protein Properties Length: 370aa    MW: 40774.8 Da    PI: 6.8974
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S03316.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.22.1e-131152344
                   --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
         SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                   i n+  r+ ++ kRr+g+lKK +EL +LCd+ +  ii+s++ 
  Jcr4S03316.10 11 IVNDAARKASLKKRRTGLLKKVSELTTLCDVSAFAIIYSPDE 52
                   669999*********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.699149IPR002100Transcription factor, MADS-box
SMARTSM004322.6E-20160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-22293IPR002100Transcription factor, MADS-box
CDDcd002664.95E-26285No hitNo description
PRINTSPR004044.5E-7323IPR002100Transcription factor, MADS-box
PfamPF003192.8E-131152IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-72338IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-73859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MTRKKVKLVW IVNDAARKAS LKKRRTGLLK KVSELTTLCD VSAFAIIYSP DETEPMFWPS  60
RPLVEQLLMR YQNIPEIERT KKMMNQESYL KERAVKVQEQ LRKNQRKNLE IEMSYLMDKL  120
HKGNGADDFE SNELHVLIWL LGEKMKDLRK RVDYFQQVPP LPPATSFLPP LPSPNEDPTV  180
QEMGHQLTAT TGANAGGDGG GVGDIRNSNS GNTMISDQWY LNIISNNNDN LASSSGAKND  240
MMNHHPYGYN ITHNGGDTGF PTGSTGNTFS LGLPLSNINM SGGGNHFEMG QLSIHGNINS  300
TSGHSFGLGL QPYQGNIDNY SGGNGMGLGM PSPTTGIEAG DPGMHEHFAG GNDTGTLYDV  360
TKPWHHNFSH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLVWIVNDAARKASLKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012081716.10.0agamous-like MADS-box protein AGL90
TrEMBLA0A067K3V40.0A0A067K3V4_JATCU; Uncharacterized protein
STRINGcassava4.1_021594m1e-111(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110141938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40210.16e-34AGAMOUS-like 48
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]