PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S03316.10 | ||||||||
Common Name | JCGZ_18633, LOC105641726 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 370aa MW: 40774.8 Da PI: 6.8974 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 41.2 | 2.1e-13 | 11 | 52 | 3 | 44 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i n+ r+ ++ kRr+g+lKK +EL +LCd+ + ii+s++ Jcr4S03316.10 11 IVNDAARKASLKKRRTGLLKKVSELTTLCDVSAFAIIYSPDE 52 669999*********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 15.699 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.6E-20 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-22 | 2 | 93 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 4.95E-26 | 2 | 85 | No hit | No description |
PRINTS | PR00404 | 4.5E-7 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.8E-13 | 11 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-7 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-7 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MTRKKVKLVW IVNDAARKAS LKKRRTGLLK KVSELTTLCD VSAFAIIYSP DETEPMFWPS 60 RPLVEQLLMR YQNIPEIERT KKMMNQESYL KERAVKVQEQ LRKNQRKNLE IEMSYLMDKL 120 HKGNGADDFE SNELHVLIWL LGEKMKDLRK RVDYFQQVPP LPPATSFLPP LPSPNEDPTV 180 QEMGHQLTAT TGANAGGDGG GVGDIRNSNS GNTMISDQWY LNIISNNNDN LASSSGAKND 240 MMNHHPYGYN ITHNGGDTGF PTGSTGNTFS LGLPLSNINM SGGGNHFEMG QLSIHGNINS 300 TSGHSFGLGL QPYQGNIDNY SGGNGMGLGM PSPTTGIEAG DPGMHEHFAG GNDTGTLYDV 360 TKPWHHNFSH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RKKVKLVWIVNDAARKASLKKRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012081716.1 | 0.0 | agamous-like MADS-box protein AGL90 | ||||
TrEMBL | A0A067K3V4 | 0.0 | A0A067K3V4_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_021594m | 1e-111 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11014 | 19 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40210.1 | 6e-34 | AGAMOUS-like 48 |
Link Out ? help Back to Top | |
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Entrez Gene | 105641726 |
Publications ? help Back to Top | |||
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