PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S03314.40
Common NameJCGZ_01473
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family B3
Protein Properties Length: 238aa    MW: 27152.3 Da    PI: 10.4374
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S03314.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.33e-18295699
                   ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
             B3  6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                    ps+v+  + l +p+ f +++ ++k++     l + +g++W+ ++ y   k++ +  l +GWk+F+++n+L++gD++ F+l+++++ ++++++fr+
  Jcr4S03314.40  2 QPSYVHPGKKLAIPNAFSRKYFKQKRG--AAALSTFEGKTWSAEFYYivHKGRTSAKLLNGWKKFAQENHLEVGDVCAFELINQTKITFKITIFRH 95
                   58999999*************888777..69999*******9888666577777788889**********************9999999***9997 PP
2B358.41.3e-18140236199
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                    ffk+ +++++l ++++ +p +f++e++++ke+  +l++    +r+W+vkl+   +k + r vl++GW +F+++n +++gD++vF+l++++   ++v
  Jcr4S03314.40 140 FFKAVITASHLGRANVHVPHDFLSEMQQSKEK-AKLQV---GNRRWDVKLNLyaNKMKHRGVLSAGWCQFARENSVQVGDVCVFELIDNQAVVMKV 231
                    89***********************9877655.34554...56*******77677777779***************************99999*** PP

                    EEE-S CS
             B3  95 kvfrk 99 
                    ++fr+
  Jcr4S03314.40 232 SIFRN 236
                    **996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-19196IPR015300DNA-binding pseudobarrel domain
CDDcd100171.38E-19194No hitNo description
SuperFamilySSF1019361.14E-18196IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.6E-6196IPR003340B3 DNA binding domain
PROSITE profilePS5086314.635196IPR003340B3 DNA binding domain
PfamPF023622.7E-17295IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.2E-19133235IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-16138235IPR015300DNA-binding pseudobarrel domain
CDDcd100176.63E-16139235No hitNo description
PROSITE profilePS5086312.605140237IPR003340B3 DNA binding domain
SMARTSM010192.3E-10140237IPR003340B3 DNA binding domain
PfamPF023622.8E-16140236IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MQPSYVHPGK KLAIPNAFSR KYFKQKRGAA ALSTFEGKTW SAEFYYIVHK GRTSAKLLNG  60
WKKFAQENHL EVGDVCAFEL INQTKITFKI TIFRHDQGNK KQPVGEKSNS REKFIQEYPS  120
CSNLCVAIKA AKEFTSIHPF FKAVITASHL GRANVHVPHD FLSEMQQSKE KAKLQVGNRR  180
WDVKLNLYAN KMKHRGVLSA GWCQFARENS VQVGDVCVFE LIDNQAVVMK VSIFRNVQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-1412723535141B3 domain-containing transcription factor VRN1
4i1k_B2e-1412723535141B3 domain-containing transcription factor VRN1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012091625.14e-89B3 domain-containing transcription factor VRN1
TrEMBLA0A067LCJ81e-175A0A067LCJ8_JATCU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.11e-17related to vernalization1 1
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]