PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S03314.20 | ||||||||
Common Name | JCGZ_01474 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | B3 | ||||||||
Protein Properties | Length: 88aa MW: 10200.6 Da PI: 9.3109 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.8 | 2.6e-15 | 2 | 81 | 18 | 99 |
--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +p +f++++++k e +l++e+ + W v+l++ + +r ++ +GW++F++ n Lk+gD++vF+l++++++ ++v++fr+ Jcr4S03314.20 2 VPHNFVSKIQQKAVE-AKLQVEN---NLWHVNLNIyrHYNANRGLFCGGWRQFARGNSLKVGDICVFELIDDENAVFKVSIFRH 81 699999999755433.3555555...99*****654645555577888**********************9999999****997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 13.324 | 1 | 82 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-13 | 2 | 81 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.86E-17 | 2 | 80 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 2.1E-16 | 2 | 80 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.24E-15 | 2 | 80 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.0014 | 2 | 82 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 88 aa Download sequence Send to blast |
HVPHNFVSKI QQKAVEAKLQ VENNLWHVNL NIYRHYNANR GLFCGGWRQF ARGNSLKVGD 60 ICVFELIDDE NAVFKVSIFR HVNQSLHA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021659119.1 | 8e-26 | B3 domain-containing transcription factor VRN1-like | ||||
TrEMBL | A0A067LKV0 | 4e-56 | A0A067LKV0_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_030600m | 5e-22 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16088 | 5 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-09 | B3 family protein |
Publications ? help Back to Top | |||
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