PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S03307.50 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | C3H | ||||||||
Protein Properties | Length: 701aa MW: 76641.9 Da PI: 7.0998 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24 | 6.8e-08 | 288 | 308 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ GtC+ Gd C +aHg Jcr4S03307.50 288 PCPEFRK-GTCQKGDACEYAHG 308 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 1.87E-13 | 94 | 176 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.022 | 98 | 128 | IPR002110 | Ankyrin repeat |
Gene3D | G3DSA:1.25.40.20 | 2.6E-14 | 98 | 197 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 8.6E-8 | 98 | 167 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 13.018 | 98 | 173 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 4.14E-12 | 100 | 196 | No hit | No description |
SMART | SM00248 | 0.077 | 133 | 165 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 9.511 | 133 | 168 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 2.5E-4 | 283 | 309 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.197 | 283 | 310 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.4E-4 | 288 | 309 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-5 | 288 | 308 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 85 | 318 | 341 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.812 | 318 | 342 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 701 aa Download sequence Send to blast |
MEKDAVFAYF GLWFVCPERN RVCAVVPRVN SSLQIPSWKT SLATQKDGIS SKCSVLLELA 60 ASDDLVGFQS EIEDKGLDVD ETSYWYGRRI GSKKMGFEQR TPLMIAAMFG STNVLKYITE 120 TNKVDVNRAS GLDKVTALHC AVAGAANSLV EIVKLLLDAS ADANRVDASG NKPADLFTPS 180 LKSPSNSRRK LVEMLLKGES LSEDEEEKLI MMSQPSKEGS EKKEYPIDVS LPDINNGIYG 240 TDEFRMYCFK VKPCSRAYSH DWTECPFVHP GENARRRDPK KYPYTCVPCP EFRKGTCQKG 300 DACEYAHGVF ESWLHPAQYR TRLCKDEIGC ARKVCFFAHK PEELRPVYAS TGSAMPSPKS 360 MSVSSMDMAT LSPLALGSSS LTLPAVSTPP MSPLAAATSS SPKSGGLWQN KVNLAPPALQ 420 LPGSRLKTAL CARDLDLEME LLGLENHANQ LQQQQLMDEI SSLSSPSCWS KDFNRIGDLK 480 PKNLDDVFGS LDPSLLSPLQ GMSLKPSTPT QLQSPTGLQI RQNMNQLRSS YPSNLSSSPV 540 RKPASYGFDS SAAVAAAMMN SRSSAFAQRS HSFIDRGAAT NRLGITAAAN SASMMSSNFS 600 NWSSPDGKLD WGVQGDELNK LKKSASFGFR SNSTPSTIAD VTLSNVDEPD VSWVNSLVKD 660 VPPVGSSLFG ADKQYNLSKG VRESLPPWME QMYIEQEQMV A |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012087294.1 | 0.0 | zinc finger CCCH domain-containing protein 29 | ||||
Swissprot | Q9XEE6 | 0.0 | C3H29_ARATH; Zinc finger CCCH domain-containing protein 29 | ||||
TrEMBL | A0A067LJF0 | 0.0 | A0A067LJF0_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_003107m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1796 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40140.2 | 0.0 | C3H family protein |