PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S03185.10
Common NameJCGZ_22398, LOC105628570
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family WOX
Protein Properties Length: 258aa    MW: 29281.4 Da    PI: 5.1862
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S03185.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.11.9e-20107167257
                    T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
       Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                    r+R+t+t+ ql++Le+ F + n +ps+++++e++++l    ++ e++V++WFqNrRa+ k+
  Jcr4S03185.10 107 RQRWTPTPVQLQILERIFDQgNGTPSKQKIKEITSELsqhgQIFESNVYNWFQNRRARSKR 167
                    89*****************99**************************************97 PP

2Wus_type_Homeobox99.91.9e-32106169265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ar+RWtPtp Q++iLe+++++G  tP+k++i++it+eL+++G+i + NV++WFQNr+aR+++kq
      Jcr4S03185.10 106 ARQRWTPTPVQLQILERIFDQGNGTPSKQKIKEITSELSQHGQIFESNVYNWFQNRRARSKRKQ 169
                        789***********************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-17101172IPR009057Homeodomain-like
PROSITE profilePS5007114.609103168IPR001356Homeobox domain
SMARTSM003891.5E-14105172IPR001356Homeobox domain
SuperFamilySSF466892.35E-17106169IPR009057Homeodomain-like
PfamPF000462.8E-18107167IPR001356Homeobox domain
CDDcd000862.33E-12107169No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MEWENNQENQ QQQQENQNQR VENRNNGNMS NNSVNGNGNG GMLYVKVMTD EQLETLRKQI  60
AVYATICEQL VEMHKTLSAQ QDLAGGRLGN LYCDPLMASG GHKITARQRW TPTPVQLQIL  120
ERIFDQGNGT PSKQKIKEIT SELSQHGQIF ESNVYNWFQN RRARSKRKQL VASSNNAESE  180
VETEVDSLNE KKTKPEIFHS QQTPPRVEDL CFQSPEISSE LNFLGVLPNQ RDDHLTGKMG  240
MPGSYNLYDQ ADDYGMGG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160168RRARSKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00617PBMTransfer from AT4G35550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012065402.10.0WUSCHEL-related homeobox 13
SwissprotO817881e-108WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBLA0A067L5P20.0A0A067L5P2_JATCU; Uncharacterized protein
STRINGcassava4.1_014347m1e-153(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18553493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.11e-110WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  3. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]