PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S03173.50
Common NameJCGZ_19956, LOC105644169
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family TCP
Protein Properties Length: 362aa    MW: 40358.8 Da    PI: 9.3175
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S03173.50genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP106.44.6e-33561942124
            TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssas.....nsssg.... 88 
                     g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak++i+el+ ++ ++ +++ +++   s+s     +   +    
  Jcr4S03173.50  56 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLPIPPVNFALNHQAMLSSSeigasQ---Snkln 148
                    689*************************************************************888887774444333333233220...12345 PP

            TCP  89 ...........................kaaksaakskksqksaasalnlakesrakararare 124
                                               k               ++  ++a +++++   r   
  Jcr4S03173.50 149 ssisweenqgvvlsstrpnfwttdahlK---------------NKSKHVATSEKENWTTR--R 194
                    5556766665654443333322222220...............21111111111111111..1 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.8E-3158202IPR005333Transcription factor, TCP
PROSITE profilePS5136931.46958116IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MISSSKEVDS PSEKEGDHAS SYHDHGKSST KASSSSSATP WLRLKDPRIV RVSRAFGGKD  60
RHSKVCTIRG LRDRRVRLSV PTAIQLYDLQ DRLGLNQPSK VVDWLLNAAK HEIDELPPLP  120
IPPVNFALNH QAMLSSSEIG ASQSNKLNSS ISWEENQGVV LSSTRPNFWT TDAHLKNKSK  180
HVATSEKENW TTRRNEEDNK QKSNEVAASS SFFPRTTHSS SPAGLINNAI PYTSFFQLEH  240
PSFPLSHMGS HGFVSQTDYH HDLHNLNSIP LPSTLSLSSG SQIFPYFPSH ATTEIDHPKQ  300
INHFQMLTPS AQTLFPNSLT PTPFSLNQSA RPFHFSVTNP RLFHSHNSGS QPDKDQDQFP  360
SK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-1863117155Putative transcription factor PCF6
5zkt_B3e-1863117155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012084835.20.0uncharacterized protein LOC105644169, partial
TrEMBLA0A067JTR20.0A0A067JTR2_JATCU; Uncharacterized protein
STRINGXP_002527630.11e-147(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.18e-40plastid transcription factor 1
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]