PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S03153.40
Common NameJCGZ_12258, LOC105639587
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family bZIP
Protein Properties Length: 350aa    MW: 37253.9 Da    PI: 5.2872
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S03153.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_173.13.9e-23251313163
                    XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                    e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+ +v++L++ N+ L++el+++++e++klkse+
  Jcr4S03153.40 251 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVENLTNDNRNLRDELQRISEECEKLKSEN 313
                    89***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077776.6E-32194IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1701.8E-19245311No hitNo description
PfamPF001701.0E-20251313IPR004827Basic-leucine zipper domain
SMARTSM003381.7E-20251315IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.3253316IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.85E-11254311No hitNo description
CDDcd147025.41E-23256306No hitNo description
PROSITE patternPS000360258273IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010629Biological Processnegative regulation of gene expression
GO:0090342Biological Processregulation of cell aging
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MGTGEDSTPA KPSKPASSTQ EIPTTPSYPD WSNSMQAYYG AGATPPPFFA STVPSPTPHP  60
YLWGSQHPLL PPYGTPVPYP ALYPAGGVYA HPNMTVTPNS AQTNTELEGK GSDGKDWASA  120
KKSKRTSAGK AVESVKAASA SGNDGASQSA ESGSDGSSDA SDENTNQQEF AANKKGSFNQ  180
MLADGANQAA VPGKPVVSMP ATNLNIGMDL WNASPAAAAA ASGAAKIRPN ASGTSSAIVP  240
AIMPEQWIQD ERELKRQKRK QSNRESARRS RLRKQAECEE LQARVENLTN DNRNLRDELQ  300
RISEECEKLK SENDSIKEEL VRMYGPDAVA NLEQSNQSSV VQSRVDEGNS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1267273RRSRLRK
2267274RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00039PBMTransfer from AT4G36730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012079074.10.0G-box-binding factor 1 isoform X1
RefseqXP_020537240.10.0G-box-binding factor 1 isoform X1
SwissprotP427741e-124GBF1_ARATH; G-box-binding factor 1
TrEMBLA0A067K6S60.0A0A067K6S6_JATCU; Uncharacterized protein
STRINGcassava4.1_022413m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59333450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.11e-104G-box binding factor 1
Publications ? help Back to Top
  1. Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S
    Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development.
    Mol Plant, 2013. 6(6): p. 1758-68
    [PMID:24157607]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  4. Karumuri S,Bandopadhyay R
    In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana.
    Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9
    [PMID:25630103]
  5. Smykowski A,Zimmermann P,Zentgraf U
    CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 1164-7
    [PMID:26826725]
  6. Smykowski A,Fischer SM,Zentgraf U
    Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1.
    Plants (Basel), 2015. 4(3): p. 691-709
    [PMID:27135347]
  7. Giri MK, et al.
    GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana.
    Plant J., 2017. 91(5): p. 802-815
    [PMID:28622438]