PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S03147.30
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB
Protein Properties Length: 540aa    MW: 59503.3 Da    PI: 4.9044
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S03147.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.41.6e-183077148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed +lvd+v+++G g+W+++ ++ g+ R++k+c++rw ++l
    Jcr4S03147.30 30 KGPWTAAEDAILVDYVTKHGEGNWNAVQKHSGLSRCGKSCRLRWANHL 77
                     79******************************************9986 PP
2Myb_DNA-binding23.41.4e-0783111130
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIart 30 
                      +g++T+eE+ +++++++++G++ W++ a++
    Jcr4S03147.30  83 KGAFTPEEERRIIELHAKMGNK-WARMAAE 111
                      799*******************.**99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.0392581IPR017930Myb domain
SMARTSM007173.1E-152979IPR001005SANT/Myb domain
PfamPF002491.7E-153077IPR001005SANT/Myb domain
SuperFamilySSF466892.38E-2431107IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-243184IPR009057Homeodomain-like
CDDcd001672.08E-113277No hitNo description
PROSITE profilePS512949.68382166IPR017930Myb domain
SMARTSM007172.5E-882164IPR001005SANT/Myb domain
SuperFamilySSF466891.6E-583163IPR009057Homeodomain-like
PfamPF002492.0E-683111IPR001005SANT/Myb domain
CDDcd001674.20E-685160No hitNo description
Gene3DG3DSA:1.10.10.602.6E-2185110IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-21145164IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MTNGVEDNKR SKVRRESPAL EEASNGPLKK GPWTAAEDAI LVDYVTKHGE GNWNAVQKHS  60
GLSRCGKSCR LRWANHLRPD LKKGAFTPEE ERRIIELHAK MGNKWARMAA ETVLKWNSEK  120
WNSFDVISQL ERKEAFCVLS STFFELPGRT DNEIKNYWNT RIKRLQRAGL PIYPPEVCLQ  180
VLNGSQESQD MGTLQSTDTH GSNLIQNDHF EIPEVEFKNL ELNRGLLSYS PTVLDISQSS  240
MLKQGVSPSH SNNFMFPAMH PAKRLRESET IFPTLDCSVS SGLPVFIQST DHFSEKIADS  300
FGVSSRCVPH TNTYGQPSLG VLSGIHALLN DNSSSSEPFC GLMKLELPSL QYSETQQDSW  360
GMPASPLPSL ESVDTLIQSP PTEQTDCLSP RSSGLLEAVL YESHTLKSSR NYSGHQTSDN  420
SIVPGDVEDC SLNPCETEWD IHGDPNSPLG HSVASVFSAC TPISGGSSDE PGYDLKPETA  480
NQVSTPYIEE KEVPNHIDFT RPDALLGSGW FGLTGVCIKD PPIRTDAVGA SFGDDVDSEC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24281645106B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346470.0KM034647.1 Jatropha curcas clone JcMYB027 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012075987.10.0transcription factor GAMYB
TrEMBLA0A067KE640.0A0A067KE64_JATCU; MYB family protein
STRINGcassava4.1_005846m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20473485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11440.13e-95myb domain protein 65