PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S03146.130 | ||||||||
Common Name | JCGZ_21504 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | WOX | ||||||||
Protein Properties | Length: 380aa MW: 41708.5 Da PI: 8.2458 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.7 | 8.1e-18 | 57 | 117 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++++eq+++Le+ F++ +p ++e++++ ++l ++ +++V++WFqNr+ + k+ Jcr4S03146.130 57 KPRWNPKPEQIRILEAIFNSgMVNPPRDEIRRIRAQLqeygQVGDANVFYWFQNRKSRSKH 117 89*****************99*************************************995 PP | |||||||
2 | Wus_type_Homeobox | 112.7 | 1.9e-36 | 56 | 118 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RW+P+peQi+iLe++++sG+++P+++ei+ri+a+L+eyG+++d+NVfyWFQNrk+R+++k Jcr4S03146.130 56 PKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 118 689**********************************************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.6E-7 | 47 | 116 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.78E-12 | 52 | 121 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 10.495 | 53 | 118 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.5E-9 | 55 | 122 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.29E-8 | 56 | 118 | No hit | No description |
Pfam | PF00046 | 1.9E-15 | 57 | 117 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0010075 | Biological Process | regulation of meristem growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MASSNRHWPS MFKSKPCTSH HHQWQHEINS SSLVSSGCHK SPYTSVPGCE ERSPEPKPRW 60 NPKPEQIRIL EAIFNSGMVN PPRDEIRRIR AQLQEYGQVG DANVFYWFQN RKSRSKHKLR 120 HLQNSKQQTY QNPSVSSSTS ALTIPTSSSS SSEKSSPKGS RRTLSLTSPN VVDVSNSPTG 180 SVNQTYFQAH NEFMTEPFFF PAQQTGGTGT GSFTQGFCFS DLSNVAQVQD NTVGPCTSLL 240 LSEMMSSKKD LDHENKNIKM QPNLSYPVTA PITHTIGLSP PFPLNPNSVT VPSTVNQIQG 300 VGESSPAGSS VAARSTVFIN DVAIEVGVGP FNLREAFGDD FLLIHSSGQP VLTNEWGLTL 360 HSLQHGASYY LVPLSVTESI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Homeodomain transcription factor required for meristem growth and early development (PubMed:15753038). Promotes cell proliferation and prevents premature differentiation in meristematic tissues during postembryonic development (PubMed:15753038). Essential for maintaining tissue growth during embryogenesis (PubMed:17706632). May act by repressing TSS to promote meristematic proliferation (PubMed:21185286). Involved in the transcriptional activation of a subset of cytokinin response factors (PubMed:20110319). May act as a negative regulator of cytokinin signaling in the dark (PubMed:21057190). {ECO:0000269|PubMed:15753038, ECO:0000269|PubMed:17706632, ECO:0000269|PubMed:20110319, ECO:0000269|PubMed:21057190, ECO:0000303|PubMed:21185286}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in the zygote after fertilization by the transcription factor WRKY2. {ECO:0000269|PubMed:21316593}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012092417.1 | 0.0 | WUSCHEL-related homeobox 9 | ||||
Refseq | XP_020541150.1 | 0.0 | WUSCHEL-related homeobox 9 | ||||
Swissprot | Q6X7J4 | 9e-91 | WOX9_ARATH; WUSCHEL-related homeobox 9 | ||||
TrEMBL | A0A067JE43 | 0.0 | A0A067JE43_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_023871m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3824 | 33 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33880.1 | 2e-65 | homeobox-3 |