PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S03141.10

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

MYB

Protein Properties

Length: 320aa MW: 36008.3 Da PI: 8.3695

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S03141.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.4	1.4e-17	30	77	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEdell +++k+ G g+W+t +++ g+ R++k+c++rw +yl Jcr4S03141.10 30 RGPWTPEEDELLSNYIKKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 77 89****************************99**********97 PP
2	Myb_DNA-binding	43.8	5.8e-14	83	146	1	48
TSSS-HHHHHHHHHHHHHTTTT.................-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.................tWktIartmgkgRtlkqcksrwqkyl 48 rgr ++E++l+++++++lG++ +W++Ia +++ gRt++++k++w+++l Jcr4S03141.10 83 RGRIAPDEEDLILRLHRLLGNRvsfflvhcgapppsdmgRWSLIAGRIP-GRTDNEIKNYWNTHL 146 678889*****************************************.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.2E-22	21	79	IPR009057	Homeodomain-like
PROSITE profile	PS51294	23.457	25	81	IPR017930	Myb domain
SuperFamily	SSF46689	1.27E-23	27	142	IPR009057	Homeodomain-like
SMART	SM00717	1.5E-13	29	79	IPR001005	SANT/Myb domain
Pfam	PF00249	2.1E-15	30	77	IPR001005	SANT/Myb domain
CDD	cd00167	1.66E-11	32	77	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.9E-21	80	151	IPR009057	Homeodomain-like
SMART	SM00717	1.7E-12	82	148	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	12.776	82	150	IPR017930	Myb domain
Pfam	PF00249	7.1E-12	84	146	IPR001005	SANT/Myb domain
CDD	cd00167	3.33E-9	88	146	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MVRNPPSSSS YSTNGRKTTT PCCSKVGIKR GPWTPEEDEL LSNYIKKEGE GRWRTLPKRA 60 GLLRCGKSCR LRWMNYLRPS VKRGRIAPDE EDLILRLHRL LGNRVSFFLV HCGAPPPSDM 120 GRWSLIAGRI PGRTDNEIKN YWNTHLSKKL ISQGIDPRTH KPLNPNPNSS QIAQNQNTGP 180 KSVNLEETEG RTYRTIATRV SQNFKMSTLD HYHQPNPLLI DNAGSADHNW PNCDDIAMDL 240 QNGDQGQSNA NQFYIGNGND EGFSSFLDSL INENENLFMT QQQQLQHPSM IVSSAQNSSI 300 WEAEVVSSMA AFVDEDVALK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-20	30	150	7	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM034701	0.0	KM034701.1 Jatropha curcas clone JcMYB081 MYB family protein gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012070432.1	0.0	transcription repressor MYB5
Swissprot	Q38850	3e-78	MYB5_ARATH; Transcription repressor MYB5
TrEMBL	A0A067KXJ9	0.0	A0A067KXJ9_JATCU; MYB family protein
STRING	cassava4.1_033576m	1e-136	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3894	30	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	1e-80	myb domain protein 5

Publications ? help Back to Top
Ranocha P,Francoz E,Burlat V,Dunand C Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion. Plant Signal Behav, 2014. 9(11): p. e977734 [PMID:25531128]