PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S03002.10 | ||||||||
Common Name | JCGZ_15194, LOC105640937 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | bZIP | ||||||||
Protein Properties | Length: 298aa MW: 32183 Da PI: 5.2946 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 45.9 | 1.2e-14 | 247 | 292 | 3 | 48 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 + +r+rr++kNRe+A rsR+RK+a++ eLe + LeaeN++L ke Jcr4S03002.10 247 AQQRQRRMIKNRESAARSRERKQAYQVELESMAVRLEAENERLLKE 292 679***************************************9886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 5.0E-5 | 245 | 298 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 7.1E-13 | 247 | 292 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.553 | 247 | 292 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 2.34E-17 | 249 | 294 | No hit | No description |
SuperFamily | SSF57959 | 2.88E-9 | 249 | 292 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.4E-12 | 250 | 292 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 252 | 267 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MASSKVMASS KPKNSDLTSS SAATRSRRAS ASSSSAGLAS ASTKPQSNRI KSFYRNLTSS 60 SSLASTMTVD GILRDVYSTP SAESTLLDAQ ITLIDTPTPV LPTSPPPTLQ TATIIETTNH 120 ASNSSNQEMN SVVLPQSNKT VDDVWREIVA GRKEMKEEPD EMMTLEDFLA KAGAADVEQD 180 DEVKMPSGGV YAFDPVPPSA FQMLDKVEGS IVGFGNGVEV VAGSEGTVLG RGKRGRAAVM 240 EPLDKAAQQR QRRMIKNRES AARSRERKQA YQVELESMAV RLEAENERLL KEKIDYSD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012080744.1 | 0.0 | ABSCISIC ACID-INSENSITIVE 5-like protein 3 isoform X2 | ||||
Swissprot | P42777 | 3e-41 | GBF4_ARATH; G-box-binding factor 4 | ||||
TrEMBL | A0A067KEV0 | 0.0 | A0A067KEV0_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_010851m | 1e-115 | (Manihot esculenta) | ||||
STRING | cassava4.1_012477m | 1e-115 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2028 | 34 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44080.1 | 2e-57 | bZIP family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105640937 |
Publications ? help Back to Top | |||
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