PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02992.20
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ARR-B
Protein Properties Length: 690aa    MW: 74801.2 Da    PI: 6.3547
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02992.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like80.42.2e-25170223155
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                    k++++Wt+ LH+rF++a++++ G ekA+Pk+ile+m+v+gLt+e+v+SHLQkYRl
  Jcr4S02992.20 170 KAKVVWTNSLHNRFLQAINHI-GLEKAVPKRILEFMGVPGLTRENVASHLQKYRL 223
                    6799*****************.********************************7 PP
2Response_reg56.61.5e-1969226111
                    EEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHHHH CS
   Response_reg  26 vaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvkav 111
                    + + +++  ale+l++kd  +Dl+++D+ mp+m+Glel k+ +e+  k+p+i+++  ++ + + e l+ Ga  +++Kp+++ +l + +
  Jcr4S02992.20   6 IVTIKNPLLALEKLQDKDgaFDLVITDLHMPEMNGLELQKQVKEKF-KIPVILMSVDDKGSVISESLESGALLYIVKPVNQGDLKNVI 92 
                    678899999*******999*************************99.************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004485.0E-5192IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011028.457196IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.04E-19592No hitNo description
SuperFamilySSF521723.7E-20697IPR011006CheY-like superfamily
PfamPF000727.0E-16692IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23003.1E-226127No hitNo description
PROSITE profilePS5129411.2167226IPR017930Myb domain
SuperFamilySSF466897.53E-19168227IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.1E-26168227IPR009057Homeodomain-like
TIGRFAMsTIGR015578.0E-26170224IPR006447Myb domain, plants
PfamPF002495.3E-6173222IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MIELSIVTIK NPLLALEKLQ DKDGAFDLVI TDLHMPEMNG LELQKQVKEK FKIPVILMSV  60
DDKGSVISES LESGALLYIV KPVNQGDLKN VIDCAVAAKK GKSIATEEMT NFEEGNSSSS  120
NDEKDYLNGA DSSSSAASVN GDNSQEKKNG KKREREGPDE EEDAAAAPKK AKVVWTNSLH  180
NRFLQAINHI GLEKAVPKRI LEFMGVPGLT RENVASHLQK YRLFLKKVAE RGLWSSQLSE  240
KAFRSSFASG YCSSLFKNAH QDYMMRAFHP GYGGNSNFSG FGSSSCFGFS LSPRFPNHNH  300
EASSSNSVFR YGQSSLFGNN FTNFQRPLLP SSSSYPLYQP NRSNNAGTTL SFDRASTYGL  360
TSNATNGLIS GPQHNQAIRR SNPFNSDNPF KFGSSNHASG SGTVNNSYPF LNPNSNYAGI  420
RLTSDGELIG SGPIGFSGKN LSSGSSLMNW TRNNNASSTA TLNGLFGYQG ASSSAAAAAA  480
PPPAPAATAA APPPPPATGF RNENPFSPST FFNNNQENII LSPFASQQQT NDTGPIGNDG  540
GNNCNDVALN FDNANSNNQQ QQLQLGEGEE DDLAELLFGP TPFQAYLLSS FNFYNKEWLE  600
LLMLTSLPVH MMLNSALPTS MNSSMMNFLL DVLLQTRLLG LNHPLPRHPQ VIHGEPIHSE  660
LNGMRIDDNA FTSENQAWLG GGFLGLPAWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-22167229264ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012090321.10.0putative two-component response regulator ARR13
TrEMBLA0A067JES40.0A0A067JES4_JATCU; Uncharacterized protein
STRINGXP_002510843.11e-155(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101422534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07210.14e-44response regulator 21