PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S02883.10

Common Name

JCGZ_01519, LOC105649578

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

Trihelix

Protein Properties

Length: 556aa MW: 64664.9 Da PI: 6.4123

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S02883.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	95.8	4e-30	110	195	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r+++++r++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea Jcr4S02883.10 110 RWPRQETLTLLEIRSRLDSRFKEANQKGPLWDEVSRIMaEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 195 8***********************************999*************************98..55667*****85 PP
2	trihelix	63.4	5.3e-20	414	502	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk...lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++ e+ Li++r+ me r+++++ +++ lWee+++km + g+ r ++ kekwen+n ++ +++ +k+++e+ + yf+ql+ Jcr4S02883.10 414 RWSDPEICSLIQIRTAMEARFQESSsgySEEFLWEEIASKMGSLGYDRDVEEIKEKWENMNIYFNMTTAECNKKRKEDLRPNNYFQQLD 502 8*******************9765669********************************99999888889999999***97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.4	107	170	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	6.853	107	168	IPR017877	Myb-like domain
Pfam	PF13837	5.4E-21	109	196	No hit	No description
CDD	cd12203	6.06E-21	109	175	No hit	No description
SMART	SM00717	0.12	411	476	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	5.935	413	474	IPR017877	Myb-like domain
CDD	cd12203	2.11E-20	414	481	No hit	No description
Pfam	PF13837	9.9E-14	414	503	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 556 aa Download sequence Send to blast
MGDHQYGLPD LRQLLATGRT HFSGLPQVTE PFFVQTSRNL APQQTHNHHH FHDSIMAAEV 60 MVSANSGLVK LGQDHYFNNA TTTSSNSTFF GVEMENGWIN NGNDVGNNSR WPRQETLTLL 120 EIRSRLDSRF KEANQKGPLW DEVSRIMAEE HGYQRSGKKC REKFENLYKY YKKTKEGKAG 180 RQDGKHYRFF RQLEALYGET SNQLASSSET HLVNDTNRTS FLYPTPINPE NKERSLSFQE 240 NKNSESLSLS NTSEFETSSS DNNDDDLSAI AYDMMNRKIG KPKGRLKKGW KGKVKDFVDL 300 QMGKLLEKQE AWMERMLKTI EDREKERICR EEEWAKQEMA RLDQIHEYWA KERARIEARD 360 VALMEELKKY ADNCERLGLS SSVEQIVRVT QTHYKNKDQR NAKKIDIDEI NFGRWSDPEI 420 CSLIQIRTAM EARFQESSSG YSEEFLWEEI ASKMGSLGYD RDVEEIKEKW ENMNIYFNMT 480 TAECNKKRKE DLRPNNYFQQ LDPYNNNGQE IDKLESLNLP SSSSYVVNSQ MHGSISCFQE 540 STCGARRISN FNNYSD

Sequence ? help Back to Top

Protein Sequence Length: 556 aa Download sequence Send to blast

MGDHQYGLPD LRQLLATGRT HFSGLPQVTE PFFVQTSRNL APQQTHNHHH FHDSIMAAEV  60
MVSANSGLVK LGQDHYFNNA TTTSSNSTFF GVEMENGWIN NGNDVGNNSR WPRQETLTLL  120
EIRSRLDSRF KEANQKGPLW DEVSRIMAEE HGYQRSGKKC REKFENLYKY YKKTKEGKAG  180
RQDGKHYRFF RQLEALYGET SNQLASSSET HLVNDTNRTS FLYPTPINPE NKERSLSFQE  240
NKNSESLSLS NTSEFETSSS DNNDDDLSAI AYDMMNRKIG KPKGRLKKGW KGKVKDFVDL  300
QMGKLLEKQE AWMERMLKTI EDREKERICR EEEWAKQEMA RLDQIHEYWA KERARIEARD  360
VALMEELKKY ADNCERLGLS SSVEQIVRVT QTHYKNKDQR NAKKIDIDEI NFGRWSDPEI  420
CSLIQIRTAM EARFQESSSG YSEEFLWEEI ASKMGSLGYD RDVEEIKEKW ENMNIYFNMT  480
TAECNKKRKE DLRPNNYFQQ LDPYNNNGQE IDKLESLNLP SSSSYVVNSQ MHGSISCFQE  540
STCGARRISN FNNYSD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC184063	5e-43	AC184063.2 Populus trichocarpa clone Pop1-108K13, complete sequence.
GenBank	AC214419	5e-43	AC214419.1 Populus trichocarpa clone POP109-H02, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012091660.1	0.0	trihelix transcription factor PTL
Refseq	XP_020539710.1	0.0	trihelix transcription factor PTL
TrEMBL	A0A067LKZ2	0.0	A0A067LKZ2_JATCU; Uncharacterized protein
STRING	POPTR_0008s02580.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2022	34	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	1e-105	Trihelix family protein

Link Out ? help Back to Top
Entrez Gene	105649578

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]