PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S02879.60 | ||||||||
Common Name | JCGZ_04583 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | bHLH | ||||||||
Protein Properties | Length: 167aa MW: 18431.4 Da PI: 5.3646 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.6 | 0.00053 | 117 | 153 | 13 | 54 |
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 R+++++ +Lr ++P + ++ +++ +Av+Y+ksL Jcr4S02879.60 117 RQKMKKMVKTLRGIVPGgD------QMNTVTVIDEAVRYLKSL 153 799*************955......8***************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.48 | 104 | 153 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.6E-5 | 111 | 159 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.33E-5 | 114 | 158 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.1E-7 | 114 | 160 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.58E-8 | 115 | 160 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MFHPAVAHKF NTPGLNMHTS FIQETFERKE VNDIEREISS SLKEDSDDIE ALLSLEEDGE 60 QEDYDDEEVS TARAYGNYGC NSPDSCSTYG SKPRKNGSSS VQKSSGSGSS SNSERKRQKM 120 KKMVKTLRGI VPGGDQMNTV TVIDEAVRYL KSLKVEVQKL GVGGLKN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012072073.1 | 1e-120 | transcription factor bHLH144 | ||||
Refseq | XP_012072074.1 | 1e-120 | transcription factor bHLH144 | ||||
Refseq | XP_012072075.1 | 1e-120 | transcription factor bHLH144 | ||||
Refseq | XP_020534930.1 | 1e-120 | transcription factor bHLH144 | ||||
Refseq | XP_020534931.1 | 1e-120 | transcription factor bHLH144 | ||||
Swissprot | Q9ASX9 | 1e-28 | BH144_ARATH; Transcription factor bHLH144 | ||||
TrEMBL | A0A067L0B9 | 1e-119 | A0A067L0B9_JATCU; Uncharacterized protein | ||||
STRING | XP_002519719.1 | 5e-83 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11411 | 11 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29950.2 | 1e-24 | bHLH family protein |
Publications ? help Back to Top | |||
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