PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Jcr4S02877.40 | ||||||||
Common Name | JCGZ_11997 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 349aa MW: 39774.7 Da PI: 5.9494 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.9 | 2.3e-27 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien +nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++g+l +s Jcr4S02877.40 9 KRIENITNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFS 58 79********************************************9997 PP | |||||||
2 | K-box | 23.5 | 2.3e-09 | 121 | 188 | 10 | 77 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqi 77 +++ e+lq+e+a L+++++ ++++R + + L+ s+ eL++ e++L + l+++ ++K+ ll +q+ Jcr4S02877.40 121 LNSDIEELQHEVASLQQQLHITEEQIRIYEPDPLKITSMGELESCEKHLVDTLTSVMQRKEYLLSSQL 188 567899**********************************************************9997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 29.674 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.2E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.66E-29 | 2 | 82 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.22E-36 | 2 | 75 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.9E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.6E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.9E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.9E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 8.1E-6 | 124 | 188 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 6.57 | 125 | 232 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0080092 | Biological Process | regulation of pollen tube growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 349 aa Download sequence Send to blast |
MGRVKLEIKR IENITNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRLSHFSGK 60 KRIEDVFARY VNLPDQEREH AVCPENKRHP DFQNKEYLLR TLQQLKSEND IALQLVNPTA 120 LNSDIEELQH EVASLQQQLH ITEEQIRIYE PDPLKITSMG ELESCEKHLV DTLTSVMQRK 180 EYLLSSQLGF DPTMQQGMPN SFENDVINWM PESSQNHVQM RCQNHQQMFD ASASLNSLRD 240 LSSTIYDPLL QGSSSNGEAH SMGDCHVSNP NDGNFSNWHH QSYASTTLHS APMPTTVLYS 300 HQVQHGMVGQ SIPEMMPREQ MEMAMSGPHA KVENEAANYD NKVPQLNGQ |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3mu6_A | 1e-15 | 2 | 70 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_B | 1e-15 | 2 | 70 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_C | 1e-15 | 2 | 70 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_D | 1e-15 | 2 | 70 | 1 | 68 | Myocyte-specific enhancer factor 2A |
6bz1_A | 2e-15 | 1 | 85 | 1 | 86 | MEF2 CHIMERA |
6bz1_B | 2e-15 | 1 | 85 | 1 | 86 | MEF2 CHIMERA |
6bz1_C | 2e-15 | 1 | 85 | 1 | 86 | MEF2 CHIMERA |
6bz1_D | 2e-15 | 1 | 85 | 1 | 86 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020536927.1 | 0.0 | agamous-like MADS-box protein AGL104 isoform X2 | ||||
Swissprot | Q9LM46 | 1e-128 | AG104_ARATH; Agamous-like MADS-box protein AGL104 | ||||
TrEMBL | A0A067KKD9 | 0.0 | A0A067KKD9_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_022532m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8525 | 27 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G22130.1 | 1e-130 | AGAMOUS-like 104 |
Publications ? help Back to Top | |||
---|---|---|---|
|