PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S02862.40

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

bZIP

Protein Properties

Length: 396aa MW: 43708.9 Da PI: 6.1926

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S02862.40	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.2	2.4e-10	166	210	5	49
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 kr++r + NR +A rs +RK +i eLe+kv++L++e ++L +l Jcr4S02862.40 166 KRAKRIIANRQSAARSKERKARYISELERKVQTLQTEATTLSAQL 210 9****************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	8.8E-16	162	226	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.599	164	227	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	9.14E-11	166	217	No hit	No description
Pfam	PF00170	4.9E-9	166	214	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.5E-11	166	219	No hit	No description
CDD	cd14703	1.67E-24	167	216	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MQDPTNTNNS KPNPTLETQN FPHGQPFSFR SSGHRRAHSE VHFRLQEDLD LVTDPFEGPS 60 GSSFDELGSE DDLFCTYMDI EKRGSRPEEG PSGLKLDNAV NGLTDGGGVQ VGRIGGGVVD 120 ADEEKNVRPR HRYSNSVDGS SFLESIEAKK AMAPDKLAEL WTLDPKRAKR IIANRQSAAR 180 SKERKARYIS ELERKVQTLQ TEATTLSAQL TLFQRDTTGL STENTELKLR LQAMEQQAQL 240 RDAFYMSLLS NCNCGLALLQ CGPLSGVPVL GISLNEALKK EVERLKLATG EMMTPTDTYN 300 LGMHHMPYTQ SSFFLPQSQT RIVNSQNMQM PQFHSFQSNM STPLQPMGGS SHSHAFPDML 360 QQDPLGRLQG LDISSRSTLV VKSEGPSLSA SESSSL

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MQDPTNTNNS KPNPTLETQN FPHGQPFSFR SSGHRRAHSE VHFRLQEDLD LVTDPFEGPS  60
GSSFDELGSE DDLFCTYMDI EKRGSRPEEG PSGLKLDNAV NGLTDGGGVQ VGRIGGGVVD  120
ADEEKNVRPR HRYSNSVDGS SFLESIEAKK AMAPDKLAEL WTLDPKRAKR IIANRQSAAR  180
SKERKARYIS ELERKVQTLQ TEATTLSAQL TLFQRDTTGL STENTELKLR LQAMEQQAQL  240
RDAFYMSLLS NCNCGLALLQ CGPLSGVPVL GISLNEALKK EVERLKLATG EMMTPTDTYN  300
LGMHHMPYTQ SSFFLPQSQT RIVNSQNMQM PQFHSFQSNM STPLQPMGGS SHSHAFPDML  360
QQDPLGRLQG LDISSRSTLV VKSEGPSLSA SESSSL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00303	DAP	Transfer from AT2G40620	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012091145.1	0.0	transcription factor RF2b
Swissprot	O22873	1e-112	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A067JCX3	0.0	A0A067JCX3_JATCU; Uncharacterized protein
STRING	cassava4.1_010314m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1548	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	1e-111	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]