PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S02850.10 | ||||||||
Common Name | JCGZ_26758, LOC105630352 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | SRS | ||||||||
Protein Properties | Length: 221aa MW: 24084 Da PI: 8.6502 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 172.1 | 2.9e-53 | 9 | 144 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskke 99 g+++CqdCGnqakk+C+h+RCRtCCks+gf+C+thvkstW+pa++rr r ++ a ++++ ++++r+ +s+ ++ +ls + + Jcr4S02850.10 9 GGSRCQDCGNQAKKECVHMRCRTCCKSKGFECQTHVKSTWIPAYRRRLRPSNIAVQQQN--------PHQQPRT-----NSNPKRLRLS---PLTG 88 6789********************************************97666664333........3334443.....3444455544...3457 PP DUF702 100 letsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154 le+ ++P+ev+s a frc r+ss+d+ g+ +laYqt+v igGhvf+GiLydqG+++ Jcr4S02850.10 89 LEVGNFPAEVNSIATFRCFRMSSIDEeGDYQLAYQTSVGIGGHVFQGILYDQGPHQ 144 89999********************978999***********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.7E-53 | 10 | 143 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 2.3E-28 | 13 | 54 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 8.4E-23 | 94 | 142 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MMRQGGLLGG SRCQDCGNQA KKECVHMRCR TCCKSKGFEC QTHVKSTWIP AYRRRLRPSN 60 IAVQQQNPHQ QPRTNSNPKR LRLSPLTGLE VGNFPAEVNS IATFRCFRMS SIDEEGDYQL 120 AYQTSVGIGG HVFQGILYDQ GPHQESFSTQ LLQDTNNNNN NLTSSGALIS TSTALTTAIT 180 TATTTAASIL SSSVGAEHSS SYPFPLNAFT SGSGLMYVCH P |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012067549.1 | 1e-136 | protein SHI RELATED SEQUENCE 3 | ||||
Swissprot | Q9LQZ5 | 2e-51 | SRS5_ARATH; Protein SHI RELATED SEQUENCE 5 | ||||
TrEMBL | A0A067LB87 | 1e-135 | A0A067LB87_JATCU; Uncharacterized protein | ||||
STRING | POPTR_0009s12450.1 | 6e-73 | (Populus trichocarpa) | ||||
STRING | cassava4.1_021477m | 7e-73 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9969 | 25 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51060.1 | 6e-51 | Lateral root primordium (LRP) protein-related |
Link Out ? help Back to Top | |
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Entrez Gene | 105630352 |
Publications ? help Back to Top | |||
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