PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S02825.20 | ||||||||
Common Name | JCGZ_15388, LOC105640161 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | C2H2 | ||||||||
Protein Properties | Length: 380aa MW: 42708 Da PI: 8.6931 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.8 | 4.3e-06 | 52 | 74 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H Jcr4S02825.20 52 YVCEICNQGFQRDQNLQMHRRRH 74 9*********************9 PP | |||||||
2 | zf-C2H2 | 17.2 | 1.4e-05 | 129 | 151 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k + +s++k H++t+ Jcr4S02825.20 129 WVCDKCSKAYAVQSDFKAHLKTC 151 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.5E-5 | 51 | 74 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 6.75E-6 | 51 | 74 | No hit | No description |
PROSITE profile | PS50157 | 10.97 | 52 | 74 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0052 | 52 | 74 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 54 | 74 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS01359 | 0 | 54 | 134 | IPR019786 | Zinc finger, PHD-type, conserved site |
SMART | SM00355 | 210 | 93 | 123 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 8.5E-5 | 120 | 150 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 6.75E-6 | 124 | 149 | No hit | No description |
SMART | SM00355 | 48 | 129 | 156 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MLANNSSSSD PFSCLDGGSN NNKKKRRPAG TPDPDAEVVS LSPKTLLESD RYVCEICNQG 60 FQRDQNLQMH RRRHKVPWKL LKRESPVVRK RVFVCPEPSC LHHDPCHALG DLVGIKKHFR 120 RKHSNHKQWV CDKCSKAYAV QSDFKAHLKT CGTRGHSCDC GRVFSRVESF IEHQDSCNMG 180 RLRPDQSQTA QGAACLSRTA SSPSPSNDNN FSAAPLLIQN RKDYNLELQL STTANLLEID 240 DNHSTQLHLS IGSRNESNTE SEKAREQQLI RLAMAEKAYA EEARQRAKRQ IELAEQEFAN 300 AQRIRQQAQS ELDKASALRE HAIKQINSTI LHITCYACRQ QFQAATPPHD NALVLSYMSS 360 AIAEAQVENN ITGINLAKIN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-17 | 127 | 178 | 5 | 56 | Zinc finger protein JACKDAW |
5b3h_F | 1e-17 | 127 | 178 | 5 | 56 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 22 | 26 | KKKRR |
2 | 22 | 27 | KKKRRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012079793.1 | 0.0 | protein SHOOT GRAVITROPISM 5 | ||||
Swissprot | F4IPE3 | 1e-147 | IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5 | ||||
TrEMBL | A0A067K5N0 | 0.0 | A0A067K5N0_JATCU; Uncharacterized protein | ||||
STRING | XP_002534293.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1769 | 32 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68130.1 | 1e-135 | indeterminate(ID)-domain 14 |
Link Out ? help Back to Top | |
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Entrez Gene | 105640161 |