PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S02785.30

Common Name

JCGZ_18280, LOC105641974

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

bHLH

Protein Properties

Length: 340aa MW: 37546 Da PI: 7.052

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S02785.30	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.9	2.1e-14	143	189	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L Jcr4S02785.30 143 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 189 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.907	140	189	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.2E-12	143	189	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.2E-15	144	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.15E-14	144	196	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.0E-13	146	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.89E-5	153	192	No hit	No description
Gene3D	G3DSA:3.30.70.260	3.9E-4	227	287	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MQQQHNTNND VIYGGGGGGG RGSGLIFPEV SPILPWSLPP VHSFNPTHFN PNPVRDHQHD 60 PFLIPPPLPS PYGSFFNRRS ASPALQFAYD GASTNDHHLR IFSDTLGPVL HHQPGSAPFG 120 LQAELGKMTA QEIMDAKALA ASKSHSEAER RRRERINNHL AKLRSLLPST TKTDKASLLA 180 EVIQHVKELK RQTSIIAETS PVPTEMDELT VDTSESDEDG KFIIKASLCC EDRSDLLPDL 240 IKTLKALRLR TLKAEITTLG GRVKNVLFIT GEEDSSSNTN DSQNQHQHQQ YSITSIQEAL 300 KAVMEKSGAD DSSSASVKRQ RTTNINILEQ QQQQQQNRSL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	148	153	ERRRRE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012082021.1	0.0	transcription factor bHLH30
Refseq	XP_020538083.1	0.0	transcription factor bHLH30
Swissprot	Q9S7Y1	1e-115	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A067KC07	0.0	A0A067KC07_JATCU; Uncharacterized protein
STRING	POPTR_0008s11490.1	1e-173	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4589	34	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	2e-92	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	105641974

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]