PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02762.60
Common NameJCGZ_16629, LOC105642342
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family Trihelix
Protein Properties Length: 541aa    MW: 59368.2 Da    PI: 6.8527
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02762.60genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix57.53.5e-18157243186
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    +W++  + +L++a++++ ++l+rg+l++ +Weev++ +  r ++ +++ +qCk+k +nl+kryk +++++ ++   s s++p+f+++e
  Jcr4S02762.60 157 EWSDAAIECLLDAYTDKFTQLNRGNLRGRDWEEVAAIVseRCQKQTKTVEQCKNKVDNLKKRYKLERHRMTNG-GISASHWPWFKKME 243
                    5*************************************666677789************************99.566679*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.9E-21155245No hitNo description
Gene3DG3DSA:3.40.1160.102.4E-69294534IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B32.879300535IPR015963Uridylate kinase, bacteria
SuperFamilySSF536331.1E-55301534IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042546.24E-121303535No hitNo description
PfamPF006965.6E-24304514IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0046939Biological Processnucleotide phosphorylation
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MASCDDDFSL LGEDNHHQTN PNHHHPHHHH ILHSTYAPHR FPAKSAPIHA PPQPILPSSV  60
AGSGNGAKNI GGGIEEAEEQ VEEEEEHNET DSAFPEVNPF SDNSNPFNNE TNLRTDKRRE  120
GEDHRDGGNS NPYSYKKPRP SSNAGNSGGE YRKDREEWSD AAIECLLDAY TDKFTQLNRG  180
NLRGRDWEEV AAIVSERCQK QTKTVEQCKN KVDNLKKRYK LERHRMTNGG ISASHWPWFK  240
KMEEIVGNSL PLKVATDEYK GGGASSGTTV RQSKRYATVA ATGSPVGQTN NIKSKSTCNT  300
RWRRVVLKIS GVALAGTGPN NIDPKVMMLI AREVAIASRL GIEIAIVVGG RNFFCGDTWV  360
TATGSDRRTA YQISMMASVM NSILLQSALE KAGVQTRVQT SFAMQEVAES YSRQRAIRHL  420
EKGRVVIFGG LGAGTGNPYF STDTAAALQA LEIHAEAVLK GTNVDGVYDC HSRDNNVTFE  480
HICFRDLVSR GATSMDMMAL TFCEENSIPV VVFNLLEPGN ISKALCGEQV GTLIDQTGSI  540
N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A4e-602945341239Uridylate kinase
3ek5_B4e-602945341239Uridylate kinase
3ek5_C4e-602945341239Uridylate kinase
3ek5_D4e-602945341239Uridylate kinase
3ek5_E4e-602945341239Uridylate kinase
3ek5_F4e-602945341239Uridylate kinase
3ek6_A4e-602945341239Uridylate kinase
3ek6_B4e-602945341239Uridylate kinase
3ek6_C4e-602945341239Uridylate kinase
3ek6_D4e-602945341239Uridylate kinase
3ek6_E4e-602945341239Uridylate kinase
3ek6_F4e-602945341239Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4751285e-49AM475128.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X048092.27, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012082543.10.0uncharacterized protein LOC105642342
TrEMBLA0A067KAG90.0A0A067KAG9_JATCU; Uncharacterized protein
STRINGXP_002528640.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40623252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]