PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S02762.30

Common Name

JCGZ_16627, LOC105642340

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

Trihelix

Protein Properties

Length: 418aa MW: 47864 Da PI: 6.2449

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S02762.30	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	77	2.9e-24	39	138	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyf 82 +Wt+++v++Li a+ +++++ +++ +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+ +++++++ +++ Jcr4S02762.30 39 KWTDSMVRLLIMAVFYIGDEAGSEVndptgkkkagglsQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtACKVVENQSLL 134 7************88888776422344445666777******************************************559*****99 PP trihelix 83 dqle 86 + ++ Jcr4S02762.30 135 ETMD 138 9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.9E-22	37	163	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010629	Biological Process	negative regulation of gene expression
GO:1900037	Biological Process	regulation of cellular response to hypoxia
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence Send to blast
MPLTKPKPQS PPSDEDEHFI GDDVTSDGKR KMSPWQRMKW TDSMVRLLIM AVFYIGDEAG 60 SEVNDPTGKK KAGGLSQKKG KWKSVSRAMM EKGFYVSPQQ CEDKFNDLNK RYKRVNDILG 120 KGTACKVVEN QSLLETMDLS PKMKEEVKKL LNSKHLFFRE MCAYHNSCGH GSSGVASGTT 180 NHSPEVATDQ SHAQHPHASH VQQQRCSHSS ENAQLATNSR SETEGSKMGR RVSNEEDDEE 240 DEEESDDDED DYGDDEDEAI EGNSRGQNGH GHGHEDEDDH EEKPSRKRQR TGIFALSSSL 300 MQQLSSELVS VIQDGAKSPW EKKHWMKVRL MELEEQQVSY QRQALELEKQ RLKWVKFSSK 360 KEREMERAKL ENERRRLESE RMVLLVRQKE LELLDLHHHQ QQQQLSSNKR SDPSSITG

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence Send to blast

MPLTKPKPQS PPSDEDEHFI GDDVTSDGKR KMSPWQRMKW TDSMVRLLIM AVFYIGDEAG  60
SEVNDPTGKK KAGGLSQKKG KWKSVSRAMM EKGFYVSPQQ CEDKFNDLNK RYKRVNDILG  120
KGTACKVVEN QSLLETMDLS PKMKEEVKKL LNSKHLFFRE MCAYHNSCGH GSSGVASGTT  180
NHSPEVATDQ SHAQHPHASH VQQQRCSHSS ENAQLATNSR SETEGSKMGR RVSNEEDDEE  240
DEEESDDDED DYGDDEDEAI EGNSRGQNGH GHGHEDEDDH EEKPSRKRQR TGIFALSSSL  300
MQQLSSELVS VIQDGAKSPW EKKHWMKVRL MELEEQQVSY QRQALELEKQ RLKWVKFSSK  360
KEREMERAKL ENERRRLESE RMVLLVRQKE LELLDLHHHQ QQQQLSSNKR SDPSSITG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975448	9e-78	HG975448.1 Solanum pennellii chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012082541.1	0.0	stress response protein NST1
TrEMBL	A0A067K2K0	0.0	A0A067K2K0_JATCU; Uncharacterized protein
STRING	cassava4.1_006702m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4820	34	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	1e-76	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Entrez Gene	105642340

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]