PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02751.60
Common NameJCGZ_22872, LOC105645373
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family HD-ZIP
Protein Properties Length: 758aa    MW: 82812.8 Da    PI: 6.0074
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02751.60genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.31.7e-2094149156
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  Jcr4S02751.60  94 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 149
                    688999***********************************************999 PP
2START218.91.7e-682774971206
                    HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
          START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                    ela +a++el+++a+ +ep+W++s        n+de++++f+++ +     ++ ea+r+++vv+m++ +lve l+d++ qW+  +     +a+tle
  Jcr4S02751.60 277 ELAVAAMEELIRMAQMGEPLWMSSLdgtnCVINEDEYIRIFPRGIGpkptgFKCEASRETAVVIMNHINLVEYLMDVN-QWSIVFSgivsRAMTLE 371
                    57899********************76555568**********999********************************.***************** PP

                    EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE- CS
          START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdl 172
                    v+s+g      galq+m+ae+q+++plvp R++++vRy++q+ +g+w++vdvS+d+ ++ p     +R++++pSg+li++++ng+skvtwvehv++
  Jcr4S02751.60 372 VLSTGvagnynGALQVMTAEFQLPTPLVPtRESYYVRYCKQHAEGTWAVVDVSLDNLRPSPA----ARCRRRPSGCLIQEMPNGYSKVTWVEHVEV 463
                    ***********************************************************995....****************************** PP

                    -SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
          START 173 kgrlphwllrslvksglaegaktwvatlqrqcek 206
                    ++r +h+l+++lv+sg+a+gak+wvatl+rqce+
  Jcr4S02751.60 464 DDRGVHSLYKQLVSSGHAFGAKRWVATLDRQCER 497
                    ********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.9E-2373149IPR009057Homeodomain-like
SuperFamilySSF466891.3E-1982151IPR009057Homeodomain-like
PROSITE profilePS5007116.92591151IPR001356Homeobox domain
SMARTSM003891.2E-1992155IPR001356Homeobox domain
CDDcd000862.68E-1994152No hitNo description
PfamPF000464.3E-1894149IPR001356Homeobox domain
PROSITE patternPS000270126149IPR017970Homeobox, conserved site
PROSITE profilePS5084844.843268500IPR002913START domain
SuperFamilySSF559616.05E-36270499No hitNo description
CDDcd088751.45E-129272496No hitNo description
SMARTSM002345.6E-63277497IPR002913START domain
PfamPF018522.9E-57278497IPR002913START domain
Gene3DG3DSA:3.30.530.205.3E-5377476IPR023393START-like domain
SuperFamilySSF559613.68E-25516750No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010090Biological Processtrichome morphogenesis
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 758 aa     Download sequence    Send to blast
MPAGVMIPAR DMPSMIGTNG NAGGFGSSSG LTLAQPNMME SQLHHHLNMT QNTSESELAR  60
LRDDEFDSTN TKSGSDNHEG GASGDDQDPR PNKKKRYHRH TQHQIQEMEA FFKECPHPDD  120
KQRKELSREL GLEPLQVKFW FQNKRTQMKT QHERHENTQL RAENEKLRAD NMRYREALSN  180
ASCPNCGGPT AIGEMSFDEH HLRLENARLR EEIDRISAIA AKYVGKPVVN YPLLSAPMPP  240
RPLELGVGNF GGEMYGAGDL LRSIGAPSEA DKSMIIELAV AAMEELIRMA QMGEPLWMSS  300
LDGTNCVINE DEYIRIFPRG IGPKPTGFKC EASRETAVVI MNHINLVEYL MDVNQWSIVF  360
SGIVSRAMTL EVLSTGVAGN YNGALQVMTA EFQLPTPLVP TRESYYVRYC KQHAEGTWAV  420
VDVSLDNLRP SPAARCRRRP SGCLIQEMPN GYSKVTWVEH VEVDDRGVHS LYKQLVSSGH  480
AFGAKRWVAT LDRQCERLAS AMATNIPTGD VGVITNQEGR KSMLKLAERM VISFCAGVSA  540
STAHTWTTLS GTGADDVRVM TRKSVDDPGR PPGIVLSAAT SFWLPVPPKR VFDFLRDENS  600
RSEWDILSNG GVVQEMAHIA NGRDTGNCVS LLRVNSANSS QSNMLILQES CTDPTASFVI  660
YAPVDIVAMN VVLNGGDPDY VALLPSGFAI LPDGTTTHDG GGIGEPASPG GSLLTVAFQI  720
LVDSVPTAKL SLGSVATVNN LIACTVERIK AALSCETA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012086344.10.0homeobox-leucine zipper protein HDG2 isoform X2
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A067JPN90.0A0A067JPN9_JATCU; Uncharacterized protein
STRINGcassava4.1_002166m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15083499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]