PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02741.40
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family bZIP
Protein Properties Length: 628aa    MW: 68784.1 Da    PI: 6.5122
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02741.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.51.7e-09179220445
                    XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                     k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Jcr4S02741.40 179 QKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 220
                    5788*************************9777776666554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.4E-7170223No hitNo description
SMARTSM003385.8E-8176239IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.415178222IPR004827Basic-leucine zipper domain
CDDcd147081.36E-26180232No hitNo description
PfamPF001701.3E-6180220IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.06E-6180223No hitNo description
PROSITE patternPS000360183198IPR004827Basic-leucine zipper domain
PfamPF141446.9E-32290363IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MGSRGGLEDE KEANGMLSFD PKLPISNAPG IEGSAIHSYR VCDFGTFKRS VAFHLEDAVE  60
LSSNTVFNPV KVSSQAVSSD PLHIGPFNKS NTSFNINPSA AQVESQRLSL EKNQQLNLVS  120
ISGGNTENWG ESNMADASPR TDISTDADTD DKNQRFDRGQ STAIAASDSS DRSKDKMDQK  180
TLRRLAQNRE AARKSRLRKK AYVQQLESSR LKLTQLEQEL QRARQQGIFI SSSGDQAHSM  240
SGNGRTSCSK LNIGACKLLF YTRLAKHRRS IGAMAFDVEY ARWLEEQNRQ INELRSAVNS  300
HAGDAELRII IDGIMAHYDE IFRLKSNAAK ADVFHLLSGM WKTPAERCFL WLGGFRSSEL  360
LKVSCLILLV PYDAGLVVKA FSLCSLCVPV HVAICVLMRI PALTVPANPV IMGAGKYADG  420
DIFHYIVHRP CFDSREGPSY FEIDGLTCLA VYLYELGIRD LKYDWVESKG SLHLSLSMRT  480
TLLMAEMQGE KPPAYSPFSS VVAALLVNQL EPLTEQQLVG IGNLQQSSQQ AEDALSQGME  540
ALQQSLAETL SSGSLGSSGS SGNVANYMGQ MAMAMGKLGT LEGFIRTDYV LSVPFGLLDR  600
ESELCSGVMH LQEKILGDIP GPAIIHGF
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2091063e-91AC209106.1 Populus trichocarpa clone POP088-K11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012068684.10.0transcription factor TGA6 isoform X1
RefseqXP_012068685.10.0transcription factor TGA6 isoform X1
RefseqXP_012068686.10.0transcription factor TGA6 isoform X1
RefseqXP_012068687.10.0transcription factor TGA6 isoform X1
RefseqXP_020533892.10.0transcription factor TGA6 isoform X1
SwissprotQ415581e-121HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A067KWK50.0A0A067KWK5_JATCU; Uncharacterized protein
STRINGcassava4.1_007074m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14703494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.22e-90TGACG motif-binding factor 6