PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02729.20
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family GATA
Protein Properties Length: 269aa    MW: 29742 Da    PI: 7.6938
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02729.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.71.2e-164276135
           GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                   C++Cgt +TplWR+gp  ++ LCnaCG +yr +g+
  Jcr4S02729.20 42 CHHCGTQSTPLWRNGPPEKPVLCNACGSRYRIRGS 76
                   ****************88888**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577163.99E-123678No hitNo description
SMARTSM004011.8E-113688IPR000679Zinc finger, GATA-type
CDDcd002022.47E-1541102No hitNo description
PfamPF003202.2E-144276IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.8E-134275IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.1234293IPR000679Zinc finger, GATA-type
PROSITE patternPS0034404267IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MMEIVAMLLA ALKREKVGDW LEKLGVLKLG FENINMGKQG PCHHCGTQST PLWRNGPPEK  60
PVLCNACGSR YRIRGSLANY VPKHAQGQPI AKRTRINSKE ENIKIEEFSN DSYHSSTSSG  120
DSTGTKSSSE SAMSYPLCCC KIEAEDGGEI PGLIQESSWK SCIPSKKRSL VVHRNLSPIE  180
KLQRDLRNIL KYEKPSILSE NEDDLLIYNA NNLQVSCNEI GLGSTFLTPS TTSKELPIET  240
HSSMDKLKKM GPAADMSMSL IDIKEELSP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020534671.11e-173GATA transcription factor 26
TrEMBLA0A067KRY91e-171A0A067KRY9_JATCU; Uncharacterized protein
STRINGcassava4.1_022916m7e-75(Manihot esculenta)
STRINGcassava4.1_026310m3e-75(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF127471024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47140.11e-26GATA transcription factor 27