PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S02701.20

Common Name

JCGZ_01230, LOC105645889

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

Trihelix

Protein Properties

Length: 219aa MW: 25049.7 Da PI: 10.1997

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S02701.20	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	44.5	4.1e-14	24	107	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +Li+a ++ +l+rg+l++++W+ev++++ r+ g+ +++ +qCk++++ l+k+yk +k+ s++p++ +l+ Jcr4S02701.20 24 CWSEGATETLIQAWGDRYVNLNRGNLRQKDWKEVADAVnaRQNGIkpRKTDVQCKNRIDTLKKKYKLEKAKPPP------SKWPFYFRLD 107 7***********************************8866676546799**************9998886......5799998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	8.1E-27	22	109	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MDPIRSLHLS TRPSPSGGGG REDCWSEGAT ETLIQAWGDR YVNLNRGNLR QKDWKEVADA 60 VNARQNGIKP RKTDVQCKNR IDTLKKKYKL EKAKPPPSKW PFYFRLDSLI GVNATVNPKK 120 KSAAVTLTLK SKSIPKLELY PDFSDGAACR ELARAILKFG EIYERIESSK QQQMVELEKQ 180 RMEFTKELEF ERMNMFMDAQ MELEKKSLKR AKDTSSSSG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269\|PubMed:21330492}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00488	DAP	Transfer from AT5G05550	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012087029.1	1e-147	trihelix transcription factor ASIL2 isoform X2
Swissprot	Q9LJG8	1e-35	ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBL	A0A067LJD4	1e-145	A0A067LJD4_JATCU; Uncharacterized protein
STRING	cassava4.1_013408m	1e-123	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1887	33	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05550.1	2e-63	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Entrez Gene	105645889

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]