PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S02701.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | LBD | ||||||||
Protein Properties | Length: 231aa MW: 26495.7 Da PI: 4.8017 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.8 | 1e-39 | 68 | 167 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +CaaCk+l+r+C ++C++apyf +++pkkfa vhk+FGasnv+k+l ++pee+red+++sl+yeAear+rdPvyG++g i lq+++ +l+ +la Jcr4S02701.10 68 SCAACKFLKRRCITNCIFAPYFRSDEPKKFAKVHKVFGASNVSKILIEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVELQLDLAI 163 6*********************************************************************************************99 PP DUF260 97 lkee 100 +k++ Jcr4S02701.10 164 AKAR 167 8875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.359 | 67 | 168 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.2E-39 | 68 | 165 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MKMDGERKEM KRKMKGDEEE DEDEEDVEDE DEENEEGKLK WKSRDIGQRR WTVIYEAMRS 60 QEPRSSSSCA ACKFLKRRCI TNCIFAPYFR SDEPKKFAKV HKVFGASNVS KILIEVPEEQ 120 REDTVNSLAY EAEARLRDPV YGCIGAIALL QRKMVELQLD LAIAKARLAK YTANSSFSSS 180 PFLHDYPSNL PPNFSEFPAC SGFIGNFSQN SSESSQDGFI NIDFSQFPYI F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-46 | 63 | 191 | 6 | 127 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-46 | 63 | 191 | 6 | 127 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 6 | 13 | RKEMKRKM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012087008.2 | 1e-138 | LOB domain-containing protein 21 | ||||
Swissprot | Q9SRL8 | 2e-59 | LBD21_ARATH; LOB domain-containing protein 21 | ||||
TrEMBL | A0A067LKA9 | 1e-136 | A0A067LKA9_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_017642m | 5e-92 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5944 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11090.1 | 1e-61 | LOB domain-containing protein 21 |
Publications ? help Back to Top | |||
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