PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S02662.40 | ||||||||
Common Name | JCGZ_26120 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | MYB | ||||||||
Protein Properties | Length: 278aa MW: 31887.6 Da PI: 7.2502 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.1 | 1.3e-15 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l +++ ++G g+W++++ g+ R +k+c++rw +yl Jcr4S02662.40 17 KGLWSPEEDQRLTNYILKHGHGCWSSVPINAGLQRNGKSCRLRWINYL 64 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.8 | 8.1e-16 | 70 | 115 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++ +E+e ++ ++++lG++ W+ Ia++++ gRt++++k++w+++l Jcr4S02662.40 70 RGMFSLQEEETILTLHRLLGNK-WSQIAQHLP-GRTDNEIKNYWHSHL 115 7889******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-21 | 11 | 67 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.581 | 12 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.5E-29 | 14 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.9E-11 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.5E-14 | 17 | 64 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.10E-9 | 20 | 64 | No hit | No description |
PROSITE profile | PS51294 | 24.85 | 65 | 119 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-25 | 68 | 120 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.0E-14 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-14 | 70 | 115 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.75E-11 | 73 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010018 | Biological Process | far-red light signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MGCKSSDKPK TKPKHKKGLW SPEEDQRLTN YILKHGHGCW SSVPINAGLQ RNGKSCRLRW 60 INYLRPGLKR GMFSLQEEET ILTLHRLLGN KWSQIAQHLP GRTDNEIKNY WHSHLKKKVI 120 KAEGILEELP NAQKTSSSYY TNDNNSNNMQ EPSSSMQTPS YESILSTDQS VPYSFDSPDN 180 KQVNYNNRIN SIPKLMFAEW LSLDSFPSLG DYQSMVSISK GTTAFDHNNP SLILQDSFMQ 240 DYLLNNNSDE YRNSIISDGS GDEIFISEFN LNNDFMYI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 7e-24 | 13 | 119 | 23 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM034660 | 0.0 | KM034660.1 Jatropha curcas clone JcMYB040 MYB family protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020540726.1 | 0.0 | transcription factor LAF1 | ||||
Swissprot | Q9M0K4 | 3e-63 | LAF1_ARATH; Transcription factor LAF1 | ||||
TrEMBL | A0A067JRY3 | 0.0 | A0A067JRY3_JATCU; MYB family protein | ||||
STRING | POPTR_0015s13190.1 | 1e-100 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3830 | 31 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25560.1 | 1e-62 | myb domain protein 18 |
Publications ? help Back to Top | |||
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