PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02662.20
Common NameJCGZ_26118, LOC105648476
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB
Protein Properties Length: 306aa    MW: 34238.6 Da    PI: 7.7126
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02662.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+++++++G g+W++ ++  g+ R++k+c++rw +yl
    Jcr4S02662.20 14 KGAWSPEEDRILIQYIQKHGHGSWRSLPKNAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding51.13e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE++ +++++ +lG++ W++Ia  ++ gRt++++k++w+++l
    Jcr4S02662.20  67 RGPFSPEEEDTIIRLHGMLGNK-WAAIAGQLP-GRTDNEIKNFWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-25564IPR009057Homeodomain-like
PROSITE profilePS5129417.843961IPR017930Myb domain
SuperFamilySSF466898.07E-3111108IPR009057Homeodomain-like
SMARTSM007178.6E-151363IPR001005SANT/Myb domain
PfamPF002491.1E-161461IPR001005SANT/Myb domain
CDDcd001679.82E-121661No hitNo description
PROSITE profilePS5129425.65562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.3E-2765116IPR009057Homeodomain-like
SMARTSM007171.6E-1566114IPR001005SANT/Myb domain
PfamPF002492.0E-1567112IPR001005SANT/Myb domain
CDDcd001671.87E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MGRTPCCDKD GVKKGAWSPE EDRILIQYIQ KHGHGSWRSL PKNAGLLRCG KSCRLRWTNY  60
LRPDIKRGPF SPEEEDTIIR LHGMLGNKWA AIAGQLPGRT DNEIKNFWNT HLKKRLYSTA  120
QKLQIHQSWS SSEPIAIKCE SASTRHMVQW ESARVEAEAR LSMETLLLNP SSSVKMERDY  180
FLQLWNSEVG ESFRSIKGKV GGACESPISQ TCSSTKLGSG SVDNGSKLQM TPIKISTSND  240
TAREQEDNSK LNADIMTASD SISSSQFTDS SDTALKLLLD VPCINDMEFL EGQTEHFSSF  300
LNLKCD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0347200.0KM034720.1 Jatropha curcas clone JcMYB100 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012090267.10.0transcription factor MYB6
SwissprotQ9M2D91e-100MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A067JEP10.0A0A067JEP1_JATCU; MYB family protein
STRINGcassava4.1_026502m1e-165(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23313280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-100myb domain protein 17
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]