PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02652.70
Common NameJCGZ_14006, LOC105642600
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB
Protein Properties Length: 385aa    MW: 43554.4 Da    PI: 5.0328
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02652.70genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.5e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rgrWT+eEde+l ++++  G g+W++ ++  g+ R++k+c++rw +yl
    Jcr4S02652.70 14 RGRWTAEEDEKLTKYIEANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                     8*******************************99************97 PP
2Myb_DNA-binding53.74.8e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T++E+e++ ++++ lG++ W++Ia++++ gRt++++k++w+++l
    Jcr4S02652.70  67 RGNITPQEEEIIFKLHASLGNR-WSLIASHLP-GRTDNEIKNYWNSHL 112
                      7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-21564IPR009057Homeodomain-like
PROSITE profilePS5129416.328961IPR017930Myb domain
SuperFamilySSF466892.27E-2811108IPR009057Homeodomain-like
SMARTSM007173.7E-121363IPR001005SANT/Myb domain
PfamPF002492.2E-141461IPR001005SANT/Myb domain
CDDcd001671.08E-81661No hitNo description
PROSITE profilePS5129425.862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-2565116IPR009057Homeodomain-like
SMARTSM007175.6E-1766114IPR001005SANT/Myb domain
PfamPF002493.9E-1567112IPR001005SANT/Myb domain
CDDcd001676.24E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051555Biological Processflavonol biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MGRAPCCEKV GLKRGRWTAE EDEKLTKYIE ANGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRADLKRGNI TPQEEEIIFK LHASLGNRWS LIASHLPGRT DNEIKNYWNS HLSRKVHIFR  120
RLGNERLQPI IDKAKISHSN IASNSKPGGS KKSRCSFKNN KRHANNNNNN NNNNNSNNKE  180
APPAAATAAA ASLQPMPQTP IPQTDTLILD QLVVVEDKDE TDLVSYPCRE SIEGLILDSS  240
KEKSIEAEKL LQENQLGFDA EMLFCDDDII QNELLETLTT KEERGNEMTE VLSSPNYKTS  300
SEGEFGNSTK SCSDDTYDLY SSSSMASCFE DYRFDWSWEE IMQENNVICS LWDSDNDCWE  360
GDDKGQQVQH MGYGNINVIA SWLLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24121165108B-MYB
1h8a_C2e-241211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00598PBMTransfer from AT5G49330Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0347050.0KM034705.1 Jatropha curcas clone JcMYB085 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012082867.10.0myb-related protein P
TrEMBLA0A067K7L30.0A0A067K7L3_JATCU; MYB family protein
STRINGcassava4.1_008985m1e-109(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.17e-73myb domain protein 111
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]