PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02612.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family TALE
Protein Properties Length: 172aa    MW: 20147.8 Da    PI: 9.6771
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02612.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.3e-091151492155
                    HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
       Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                    k +yp++ ++  LA+ +gL+++q+ +WF N+R ++
  Jcr4S02612.10 115 KWPYPTEGDKIALAEATGLDQKQINNWFINQRKRH 149
                    569*****************************985 PP
2ELK38.32.8e-136990122
            ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                   ELK+ LlrKYsgy+++Lk+EFs
  Jcr4S02612.10 69 ELKDKLLRKYSGYISNLKHEFS 90
                   9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011881.1E-76990IPR005539ELK domain
PROSITE profilePS5121310.866989IPR005539ELK domain
PfamPF037894.2E-116990IPR005539ELK domain
PROSITE profilePS5007112.48789152IPR001356Homeobox domain
SuperFamilySSF466892.14E-2090166IPR009057Homeodomain-like
SMARTSM003892.9E-1391156IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-2894153IPR009057Homeodomain-like
CDDcd000862.18E-11101153No hitNo description
PfamPF059202.0E-17109148IPR008422Homeobox KN domain
PROSITE patternPS000270127150IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MRGHNRHFKI GKQSCKPQGA PRSYRCWAEP VSATIRLNDE AAGSSDEDVS GGEVEIEMQD  60
CLRPNEDREL KDKLLRKYSG YISNLKHEFS KKKKKGKLPK EARQVLLNWW NIHYKWPYPT  120
EGDKIALAEA TGLDQKQINN WFINQRKRHW KPSENMQFSV VDSIYGSYFM NE
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012080031.11e-87homeobox protein knotted-1-like 6
SwissprotQ84JS62e-56KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A067KGV61e-86A0A067KGV6_JATCU; Uncharacterized protein
STRINGcassava4.1_011625m2e-73(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.12e-52KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]