PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02553.40
Common NameJCGZ_01344, LOC105646817
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB_related
Protein Properties Length: 326aa    MW: 35908.4 Da    PI: 7.9401
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02553.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61.1e-16849447
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     W  eEd +++ a++ +G++ W++Iar ++ gRt++ +k++w++ 
    Jcr4S02553.40  8 WADEEDRIIISAHAIHGNK-WAAIARLLP-GRTDNAIKNHWNST 49
                     99*****************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.979154IPR017930Myb domain
SMARTSM007171.9E-13452IPR001005SANT/Myb domain
SuperFamilySSF466896.32E-15654IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-20751IPR009057Homeodomain-like
PfamPF002492.2E-14849IPR001005SANT/Myb domain
CDDcd001679.53E-13850No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MLWMYVHWAD EEDRIIISAH AIHGNKWAAI ARLLPGRTDN AIKNHWNSTL RRRCIDQGRL  60
KPGPSDATKD GSRDKTKASS EETPSVGTVN SLRPLEGRRF PIDDQPSQQE DQVQKDNISQ  120
LNASRFVSEP QVHPTLPRPK ARVSAFSVYS PPSGPKIGCV HSRSNPTQGP LVQASRTDVG  180
LHKFLKDINV DPVVPLRCGY GCCSMPSGNH PPRSLLGPEF VEYEELPSFS SQELVSIATD  240
LNNIAWIKSG LENSSSGIPS TAASYRMSQG ASVGSQMVMS SEQNLRNSHM AYEEGRNKLM  300
GMMTDTLSTQ MPAQPFAMRP EVESLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mbj_A3e-18853651MYB PROTO-ONCOGENE PROTEIN
1mbk_A3e-18853651MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346280.0KM034628.1 Jatropha curcas clone JcMYB007 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012088150.10.0transcription factor MYB25
TrEMBLA0A067LKI80.0A0A067LKI8_JATCU; MYB family protein
STRINGcassava4.1_008330m1e-161(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39863362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.18e-61myb domain protein 109
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]