PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02467.10
Common NameJCGZ_03094, LOC105630084
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family Nin-like
Protein Properties Length: 725aa    MW: 80461 Da    PI: 7.4546
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02467.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK811.2e-25630707152
         RWP-RK   1 aekeisledlskyFslpikdAAkeLg..........................vclTvLKriCRqyGIkRWPhRkiksl 52 
                    aek+isl++l++yF++++kdAAk++g                          vc+T+LKriCRq+GI RWP+Rk+k++
  Jcr4S02467.10 630 AEKTISLQVLRQYFAGSLKDAAKSIGglsiaefcnplkkvlvrrdcfglchfVCPTTLKRICRQHGITRWPSRKLKKV 707
                    589*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151913.924620725IPR003035RWP-RK domain
PfamPF020421.0E-21633707IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 725 aa     Download sequence    Send to blast
MDDGAFNPNS RPRTFSGTAM DLDFIDELLD DGCWLETTDG FNFLQPGLSN SGVPSDPSQY  60
SPYLESSSSL ASTNLHQVIH QEAAENNLPG NPPCNNTRGK ELTESESQNQ SSLKITSSLV  120
QPEPSPIEGS ELGTRLWIAP MAGVQSSSSV KQRLIHAIGK LKECAKDMEV LVQIWVPTKK  180
EGKCVLTTIG QPSFHSLKNE SLASYRNVSE AYNFPVEGDS KESLGLPGRV FLGKLPESTP  240
DVRFFRSDEY PRKSYAKQYN IRGSLAVPVL ERGTGNCLGV VEVITTSQYI NYRPELETIC  300
KALEAVDLRS SQHFCPPSVK ACKEFCQAAV PEISEILGSV CKTHKLPLAL TWARCFQQGK  360
GGCRHFDENF AHSISTVDSA CFVADTEFLA FHAACSEQYL FLGQGIVGKA FMMNKQCFAT  420
DITSFSKTDY PLSHHAKVLD LHAAVAIPLR STYAGSADFV LELFLPKDCR DGEEQKRIWD  480
LLPIAIQQSC KSLHVVMDKE QEEDIRWQMA VNSNGRYNKQ ENHNFASSSL QQHYPESSSW  540
ITQMMEAQQK GKSVCVSWDT ENKPKQEFKV ATNYDDTPED LYSKQVFAES GQLHQNSGNK  600
NSIEVSKNSS FAGQHSSGSK KGGEKRRTKA EKTISLQVLR QYFAGSLKDA AKSIGGLSIA  660
EFCNPLKKVL VRRDCFGLCH FVCPTTLKRI CRQHGITRWP SRKLKKVGHS LKKLQLVIDS  720
VQGAE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012067164.10.0protein NLP2
RefseqXP_012067165.10.0protein NLP2
SwissprotQ7X9B90.0NLP2_ARATH; Protein NLP2
TrEMBLA0A067L0N80.0A0A067L0N8_JATCU; Uncharacterized protein
STRINGcassava4.1_001199m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12373399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35270.10.0Nin-like family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]