PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02411.20
Common NameJCGZ_09486, LOC105636610
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family Trihelix
Protein Properties Length: 492aa    MW: 56307 Da    PI: 5.1655
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02411.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix93.52.2e-2945129187
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                    rW++qe++aL+++r++m+ ++r++ lk+plWeevs+k++e g++rs+k+Ckek+en+ k+++++keg++++  ++ + +++f+qlea
  Jcr4S02411.20  45 RWPRQETMALLKIRSDMDVAFREAGLKAPLWEEVSRKLSELGYNRSAKKCKEKFENIYKYHRRTKEGRSGK--GNGKAYRFFEQLEA 129
                    8********************************************************************96..66667*******85 PP
2trihelix103.81.2e-32326411187
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                    rW+k+e+ aLi +r++++ +++++  k+plWee+s+ m++ g++r++k+Ckekwen+nk++k++ke++kkr +e+s+tcpyf+ql+a
  Jcr4S02411.20 326 RWPKEEIEALISLRTKLDMQYQDNGPKGPLWEEISAEMKKLGYNRNAKRCKEKWENMNKYFKRVKESNKKR-PEDSKTCPYFHQLDA 411
                    8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.01142104IPR001005SANT/Myb domain
CDDcd122035.14E-2345109No hitNo description
PROSITE profilePS500907.14345102IPR017877Myb-like domain
PfamPF138375.4E-2045130No hitNo description
SMARTSM007173.9E-6323385IPR001005SANT/Myb domain
SuperFamilySSF466891.2E-5324405IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.0E-6324383IPR009057Homeodomain-like
CDDcd122031.02E-24325390No hitNo description
PfamPF138372.2E-23325412No hitNo description
PROSITE profilePS500907.921325383IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MEISTLPENS SAATGNLVNE VGGGGFDEEE KLKVEEGDRY LVGTRWPRQE TMALLKIRSD  60
MDVAFREAGL KAPLWEEVSR KLSELGYNRS AKKCKEKFEN IYKYHRRTKE GRSGKGNGKA  120
YRFFEQLEAL DNNQVLLSSS STDIAHSSMA AVAVNPVNIN TSTILSSIQS PSINFVDNGS  180
TSATSTSSEE SEGTRKKKRK LTEFFEKLMK EVIEKQESLQ RKFLDAIEKY EKDRMTREEA  240
WKMQELDRIK RERELLIQER SIAAAKDAAV LSFLQKFSEQ TSSVQSPDNQ LIPVQLPENQ  300
IVPAEKVVMA QENNNIESFG HMSSSRWPKE EIEALISLRT KLDMQYQDNG PKGPLWEEIS  360
AEMKKLGYNR NAKRCKEKWE NMNKYFKRVK ESNKKRPEDS KTCPYFHQLD AIYKGKTRKV  420
DNPVTSGNEL KPEELLMHMM GGQEERQQQE SVTTEDGESE NVDQNQEDDR ENDDEDGYRV  480
VANDPSAVAM ME
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195200KKKRKL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012075316.10.0trihelix transcription factor GT-2
SwissprotQ391171e-123TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A067KGU30.0A0A067KGU3_JATCU; Uncharacterized protein
STRINGcassava4.1_006275m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.21e-121Trihelix family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]