PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02370.80
Common NameJCGZ_26359, JHL07K02.12, LOC105648710
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family LFY
Protein Properties Length: 358aa    MW: 41097.5 Da    PI: 8.5298
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02370.80genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY201.65.3e-6211551159
        FLO_LFY   1 mdpeafsaslfkwdpraaaaapparlleeaavseapleaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslsei 96 
                    mdpeaf+as fkwdpra + +pp+r le  a+ ++p +a  a++ r+l +leelf+ayG+ry+t+akiaelGftv+tL++mkdeeld++m+sl++i
  Jcr4S02370.80   1 MDPEAFTASWFKWDPRALV-PPPNRQLEAVAQLPQP-AAGYAVKPRELCGLEELFQAYGIRYYTAAKIAELGFTVNTLLNMKDEELDEMMNSLCQI 94 
                    9**************9776.6666666666666666.566777888899*********************************************** PP

        FLO_LFY  97 frldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeglseepvqeeke 159
                    fr+dllvGeryGikaavraerrrleee+  ++rr+lls+d++ aldalsqeg +++++q++k+
  Jcr4S02370.80  95 FRWDLLVGERYGIKAAVRAERRRLEEED--SRRRHLLSADTTIALDALSQEGGERKKQQQQKQ 155
                    **************************88..99999*****************88888877665 PP
2FLO_LFY415.65.1e-127147342185386
        FLO_LFY 185 kkkaskkkqkrkkkkelkseededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtk 280
                    +kk++++kq+r+k ++  ++ d d++ee+    e+  ++g erqrehPfivtepgevargkknGLDYLf+LyeqCr+fL+qvq+iakerGekcPtk
  Jcr4S02370.80 147 RKKQQQQKQRRRKGQR--KAVDIDQDEEN----ENDENGGYERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCRDFLIQVQNIAKERGEKCPTK 236
                    3444344444444433..34444443333....334456789****************************************************** PP

        FLO_LFY 281 vtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLrq 376
                    vtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrr fkergenvGawrqacykplvaiaarqgwdida+fnahprL+iWYvPtkLrq
  Jcr4S02370.80 237 VTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEASNALRRVFKERGENVGAWRQACYKPLVAIAARQGWDIDAIFNAHPRLAIWYVPTKLRQ 332
                    ************************************************************************************************ PP

        FLO_LFY 377 LChlerskas 386
                    LCh+er++a+
  Jcr4S02370.80 333 LCHAERNSAT 342
                    ******9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016981.0E-621153IPR002910Floricaula/leafy protein
PfamPF016983.3E-122147341IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0031490Molecular Functionchromatin DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MDPEAFTASW FKWDPRALVP PPNRQLEAVA QLPQPAAGYA VKPRELCGLE ELFQAYGIRY  60
YTAAKIAELG FTVNTLLNMK DEELDEMMNS LCQIFRWDLL VGERYGIKAA VRAERRRLEE  120
EDSRRRHLLS ADTTIALDAL SQEGGERKKQ QQQKQRRRKG QRKAVDIDQD EENENDENGG  180
YERQREHPFI VTEPGEVARG KKNGLDYLFH LYEQCRDFLI QVQNIAKERG EKCPTKVTNQ  240
VFRYAKKAGA SYINKPKMRH YVHCYALHCL DEEASNALRR VFKERGENVG AWRQACYKPL  300
VAIAARQGWD IDAIFNAHPR LAIWYVPTKL RQLCHAERNS ATASSSVSVS GGGDHLPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A1e-1111803582194PROTEIN LEAFY
2vy2_A1e-1111803582194PROTEIN LEAFY
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00095SELEXTransfer from AT5G61850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0119620.0AP011962.1 Jatropha curcas DNA, clone: JHL07K02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012090574.10.0floricaula/leafy homolog
SwissprotO040640.0FLLH_POPTR; Floricaula/leafy homolog
TrEMBLE6NU120.0E6NU12_JATCU; JHL07K02.12 protein
STRINGcassava4.1_031323m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80333346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-110floral meristem identity control protein LEAFY (LFY)
Publications ? help Back to Top
  1. Tuskan GA, et al.
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
    Science, 2006. 313(5793): p. 1596-604
    [PMID:16973872]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]